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Clec2h C-type lectin domain family 2, member H [ Rattus norvegicus (Norway rat) ]

Gene ID: 312745, updated on 11-Apr-2024

Summary

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Symbol
Clec2hprovided by RGD
Full Name
C-type lectin domain family 2, member Hprovided by RGD
Primary source
RGD:1306865
See related
Ensembl:ENSRNOG00000061757 AllianceGenome:RGD:1306865
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Clecsf2; AABR07062154.2
Expression
Biased expression in Thymus (RPKM 7.5), Spleen (RPKM 2.4) and 7 other tissues See more
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Genomic context

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Location:
4q42
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (164179295..164190778, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (162493307..162503318, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (162810384..162844330, complement)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene killer cell lectin like receptor B1 Neighboring gene ARL14 effector protein-like Neighboring gene ankyrin repeat domain-containing protein 13C-like Neighboring gene C-type lectin domain family 2, member E

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
C-type lectin domain family 2 member H; C-type lectin domain family 2 member E
Names
C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 2 (activation-induced)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    164179295..164190778 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063286985.1 → XP_063143055.1  C-type lectin domain family 2 member E isoform X3

  2. XM_063286984.1 → XP_063143054.1  C-type lectin domain family 2 member E isoform X2

  3. XM_063286983.1 → XP_063143053.1  C-type lectin domain family 2 member H isoform X1

Nucleotide Protein Strain
Heading Accession and Version

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