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Csmd2 CUB and Sushi multiple domains 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 313040, updated on 6-Jun-2024

Summary

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Official Symbol
Csmd2provided by RGD
Official Full Name
CUB and Sushi multiple domains 2provided by RGD
Primary source
RGD:1565728
See related
Ensembl:ENSRNOG00000007057 AllianceGenome:RGD:1565728
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1565728
Summary
Predicted to be integral component of membrane. Orthologous to human CSMD2 (CUB and Sushi multiple domains 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Brain (RPKM 33.6), Lung (RPKM 14.8) and 2 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Csmd2 in Genome Data Viewer
Location:
5q36
Exon count:
72
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (145626823..146196815)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (140342352..140912422)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (146091167..146743436)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120102983 Neighboring gene similar to human chromosome 1 open reading frame 94 Neighboring gene uncharacterized LOC134479032 Neighboring gene high-mobility group box 4 Neighboring gene uncharacterized LOC134486995 Neighboring gene zinc finger and SCAN domain containing 20 Neighboring gene toll-like receptor 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in maintenance of postsynaptic density structure ISO
Inferred from Sequence Orthology
more info
  
involved_in postsynaptic density assembly ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in glutamatergic synapse ISO
Inferred from Sequence Orthology
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in postsynaptic density membrane ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
CUB and sushi domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    145626823..146196815
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063288624.1 → XP_063144694.1  CUB and sushi domain-containing protein 2

    UniProtKB/TrEMBL
    A0A0G2K6F2

RNA

  1. XR_010066645.1 RNA Sequence

  2. XR_010066640.1 RNA Sequence

  3. XR_010066641.1 RNA Sequence

  4. XR_010066642.1 RNA Sequence

  5. XR_010066643.1 RNA Sequence

  6. XR_010066644.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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