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Fsd1l fibronectin type III and SPRY domain containing 1-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 313208, updated on 5-Mar-2024

Summary

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Official Symbol
Fsd1lprovided by RGD
Official Full Name
fibronectin type III and SPRY domain containing 1-likeprovided by RGD
Primary source
RGD:1564809
See related
Ensembl:ENSRNOG00000059876 AllianceGenome:RGD:1564809
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1564809
Summary
Orthologous to human FSD1L (fibronectin type III and SPRY domain containing 1 like). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Heart (RPKM 277.5), Muscle (RPKM 90.6) and 7 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Fsd1l in Genome Data Viewer
Location:
5q24
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (73052565..73130292)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (68258877..68334931)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (70441075..70517131)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102551410 Neighboring gene uncharacterized LOC120102879 Neighboring gene solute carrier family 44 member 1 Neighboring gene uncharacterized LOC102551474 Neighboring gene chromobox protein homolog 3-like Neighboring gene fukutin Neighboring gene uncharacterized LOC134478974 Neighboring gene TAL bHLH transcription factor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
FSD1-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    73052565..73130292
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063261284.1 → XP_063117354.1  FSD1-like protein isoform X4

  2. XM_008763722.4 → XP_008761944.1  FSD1-like protein isoform X1

    See identical proteins and their annotated locations for XP_008761944.1

    UniProtKB/TrEMBL
    A0A0G2JZ60, A0A8I6AAF2
    Related
    ENSRNOP00000070921.1
    Conserved Domains (3) summary
    cd00063
    Location:165 → 265
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12901
    Location:270 → 484
    SPRY_PRY_FSD1; Fibronectin type III and SPRY containing 1 (FSD1) domain includes PRY at the N-terminus
    cl23765
    Location:4 → 130
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

  3. XM_008763723.4 → XP_008761945.1  FSD1-like protein isoform X2

    See identical proteins and their annotated locations for XP_008761945.1

    UniProtKB/TrEMBL
    A0A8I6AAF2
    Related
    ENSRNOP00000090606.1
    Conserved Domains (3) summary
    cd00063
    Location:165 → 265
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12901
    Location:270 → 473
    SPRY_PRY_FSD1; Fibronectin type III and SPRY containing 1 (FSD1) domain includes PRY at the N-terminus
    cl23765
    Location:4 → 130
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

  4. XM_008763724.4 → XP_008761946.1  FSD1-like protein isoform X3

    See identical proteins and their annotated locations for XP_008761946.1

    UniProtKB/TrEMBL
    A0A8I6AAF2
    Conserved Domains (3) summary
    cd00063
    Location:165 → 265
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12901
    Location:270 → 472
    SPRY_PRY_FSD1; Fibronectin type III and SPRY containing 1 (FSD1) domain includes PRY at the N-terminus
    cl23765
    Location:4 → 130
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

  5. XM_008763725.4 → XP_008761947.1  FSD1-like protein isoform X5

    See identical proteins and their annotated locations for XP_008761947.1

    UniProtKB/TrEMBL
    A0A8I6AAF2
    Conserved Domains (3) summary
    cd00063
    Location:143 → 231
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12901
    Location:236 → 450
    SPRY_PRY_FSD1; Fibronectin type III and SPRY containing 1 (FSD1) domain includes PRY at the N-terminus
    cl23765
    Location:4 → 88
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

  6. XM_039111026.1 → XP_038966954.1  FSD1-like protein isoform X6

    Conserved Domains (2) summary
    cd00063
    Location:52 → 140
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12901
    Location:145 → 359
    SPRY_PRY_FSD1; Fibronectin type III and SPRY containing 1 (FSD1) domain includes PRY at the N-terminus

  7. XM_039111028.1 → XP_038966956.1  FSD1-like protein isoform X8

    Conserved Domains (2) summary
    cd00063
    Location:2 → 78
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12901
    Location:83 → 297
    SPRY_PRY_FSD1; Fibronectin type III and SPRY containing 1 (FSD1) domain includes PRY at the N-terminus

  8. XM_039111027.2 → XP_038966955.1  FSD1-like protein isoform X7

    Conserved Domains (2) summary
    cd00063
    Location:16 → 118
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12901
    Location:123 → 337
    SPRY_PRY_FSD1; Fibronectin type III and SPRY containing 1 (FSD1) domain includes PRY at the N-terminus
Nucleotide Protein Strain
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