U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Frmpd3 FERM and PDZ domain containing 3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 315916, updated on 5-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
Frmpd3provided by RGD
Official Full Name
FERM and PDZ domain containing 3provided by RGD
Primary source
RGD:1563753
See related
Ensembl:ENSRNOG00000065509 AllianceGenome:RGD:1563753
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1563753
Summary
Orthologous to human FRMPD3 (FERM and PDZ domain containing 3). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Brain (RPKM 23.3), Lung (RPKM 4.1) and 2 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
Xq32
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (108752511..108902393)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (103964168..104113864)
106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (111689587..111778943)

Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene nucleoporin 62 C-terminal like Neighboring gene dynein axonemal assembly factor 6 Neighboring gene small nucleolar RNA SNORA48 Neighboring gene phosphoribosyl pyrophosphate synthetase 1 Neighboring gene TSC22 domain family, member 3

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
FERM and PDZ domain-containing protein 3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086039.1 Reference GRCr8

    Range
    108752511..108902393
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039100596.2 → XP_038956524.1  FERM and PDZ domain-containing protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZZJ0
    Related
    ENSRNOP00000084520.1
    Conserved Domains (5) summary
    smart00295
    Location:148 → 367
    B41; Band 4.1 homologues
    PHA03247
    Location:829 → 1293
    PHA03247; large tegument protein UL36; Provisional
    cd00992
    Location:19 → 95
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd13183
    Location:363 → 466
    FERM_C_FRMPD1_FRMPD3_FRMPD4; FERM domain C-lobe of FERM and PDZ domain containing proteins 1, 3, and 4 (FRMPD1, 3, 4)
    cd17169
    Location:145 → 237
    FERM_F1_FRMPD3; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F1 sub-domain, found in FERM and PDZ domain-containing protein 3 (FRMPD3)

  2. XM_063280550.1 → XP_063136620.1  FERM and PDZ domain-containing protein 3 isoform X2

  3. XM_039100600.2 → XP_038956528.1  FERM and PDZ domain-containing protein 3 isoform X2

    UniProtKB/TrEMBL
    A6HLS1
    Conserved Domains (4) summary
    smart00295
    Location:13 → 232
    B41; Band 4.1 homologues
    PHA03247
    Location:694 → 1158
    PHA03247; large tegument protein UL36; Provisional
    cd13183
    Location:228 → 331
    FERM_C_FRMPD1_FRMPD3_FRMPD4; FERM domain C-lobe of FERM and PDZ domain containing proteins 1, 3, and 4 (FRMPD1, 3, 4)
    cd17169
    Location:10 → 102
    FERM_F1_FRMPD3; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F1 sub-domain, found in FERM and PDZ domain-containing protein 3 (FRMPD3)

  4. XM_039100595.2 → XP_038956523.1  FERM and PDZ domain-containing protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZZJ0
    Conserved Domains (5) summary
    smart00295
    Location:148 → 367
    B41; Band 4.1 homologues
    PHA03247
    Location:829 → 1293
    PHA03247; large tegument protein UL36; Provisional
    cd00992
    Location:19 → 95
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd13183
    Location:363 → 466
    FERM_C_FRMPD1_FRMPD3_FRMPD4; FERM domain C-lobe of FERM and PDZ domain containing proteins 1, 3, and 4 (FRMPD1, 3, 4)
    cd17169
    Location:145 → 237
    FERM_F1_FRMPD3; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F1 sub-domain, found in FERM and PDZ domain-containing protein 3 (FRMPD3)

  5. XM_039100599.2 → XP_038956527.1  FERM and PDZ domain-containing protein 3 isoform X2

    UniProtKB/TrEMBL
    A6HLS1
    Conserved Domains (4) summary
    smart00295
    Location:13 → 232
    B41; Band 4.1 homologues
    PHA03247
    Location:694 → 1158
    PHA03247; large tegument protein UL36; Provisional
    cd13183
    Location:228 → 331
    FERM_C_FRMPD1_FRMPD3_FRMPD4; FERM domain C-lobe of FERM and PDZ domain containing proteins 1, 3, and 4 (FRMPD1, 3, 4)
    cd17169
    Location:10 → 102
    FERM_F1_FRMPD3; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F1 sub-domain, found in FERM and PDZ domain-containing protein 3 (FRMPD3)

  6. XM_039100597.2 → XP_038956525.1  FERM and PDZ domain-containing protein 3 isoform X2

    UniProtKB/TrEMBL
    A6HLS1
    Conserved Domains (4) summary
    smart00295
    Location:13 → 232
    B41; Band 4.1 homologues
    PHA03247
    Location:694 → 1158
    PHA03247; large tegument protein UL36; Provisional
    cd13183
    Location:228 → 331
    FERM_C_FRMPD1_FRMPD3_FRMPD4; FERM domain C-lobe of FERM and PDZ domain containing proteins 1, 3, and 4 (FRMPD1, 3, 4)
    cd17169
    Location:10 → 102
    FERM_F1_FRMPD3; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F1 sub-domain, found in FERM and PDZ domain-containing protein 3 (FRMPD3)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Miscellaneous