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Ino80d INO80 complex subunit D [ Rattus norvegicus (Norway rat) ]

Gene ID: 316440, updated on 13-Apr-2024

Summary

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Official Symbol
Ino80dprovided by RGD
Official Full Name
INO80 complex subunit Dprovided by RGD
Primary source
RGD:1304808
See related
Ensembl:ENSRNOG00000024272 AllianceGenome:RGD:1304808
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1304808
Summary
Predicted to be active in nucleus. Orthologous to human INO80D (INO80 complex subunit D). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Thymus (RPKM 108.8), Lung (RPKM 101.0) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Ino80d in Genome Data Viewer
Location:
9q32
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (71940941..72007879, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (64447075..64514013, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (69820520..69887475, complement)

Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein L37, pseudogene 5 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene NOP16 nucleolar protein, pseudogene 2 Neighboring gene NADH:ubiquinone oxidoreductase core subunit S1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. The INO80 family of chromatin-remodeling enzymes: regulators of histone variant dynamics. Watanabe S, et al. Cold Spring Harb Symp Quant Biol, 2010. PMID 21502417
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in chromatin remodeling ISO
Inferred from Sequence Orthology
more info
  
involved_in positive regulation of DNA repair ISO
Inferred from Sequence Orthology
more info
  
involved_in positive regulation of DNA-templated transcription ISO
Inferred from Sequence Orthology
more info
  
involved_in positive regulation of telomere maintenance in response to DNA damage ISO
Inferred from Sequence Orthology
more info
  
involved_in regulation of DNA repair ISO
Inferred from Sequence Orthology
more info
  
involved_in regulation of DNA replication ISO
Inferred from Sequence Orthology
more info
  
involved_in regulation of DNA strand elongation ISO
Inferred from Sequence Orthology
more info
  
involved_in regulation of cell cycle ISO
Inferred from Sequence Orthology
more info
  
involved_in regulation of chromosome organization ISO
Inferred from Sequence Orthology
more info
  
involved_in regulation of embryonic development ISO
Inferred from Sequence Orthology
more info
  
involved_in telomere maintenance ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
part_of Ino80 complex ISO
Inferred from Sequence Orthology
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
INO80 complex subunit D

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001191809.1 → NP_001178738.1  INO80 complex subunit D

    See identical proteins and their annotated locations for NP_001178738.1

    Status: PROVISIONAL

    Source sequence(s)
    JAXUCZ010000009
    UniProtKB/TrEMBL
    D3ZTM2
    Conserved Domains (3) summary
    PRK14971
    Location:170 → 285
    PRK14971; DNA polymerase III subunit gamma/tau
    pfam05109
    Location:908 → 1021
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam13891
    Location:18 → 79
    zf-C3Hc3H; Potential DNA-binding domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086027.1 Reference GRCr8

    Range
    71940941..72007879 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006245025.4 → XP_006245087.1  INO80 complex subunit D isoform X1

    See identical proteins and their annotated locations for XP_006245087.1

    UniProtKB/TrEMBL
    D3ZTM2
    Conserved Domains (3) summary
    PRK14971
    Location:170 → 285
    PRK14971; DNA polymerase III subunit gamma/tau
    pfam05109
    Location:908 → 1021
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam13891
    Location:18 → 79
    zf-C3Hc3H; Potential DNA-binding domain

  2. XM_006245023.3 → XP_006245085.1  INO80 complex subunit D isoform X1

    See identical proteins and their annotated locations for XP_006245085.1

    UniProtKB/TrEMBL
    D3ZTM2
    Conserved Domains (3) summary
    PRK14971
    Location:170 → 285
    PRK14971; DNA polymerase III subunit gamma/tau
    pfam05109
    Location:908 → 1021
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam13891
    Location:18 → 79
    zf-C3Hc3H; Potential DNA-binding domain

  3. XM_006245034.4 → XP_006245096.1  INO80 complex subunit D isoform X2

    See identical proteins and their annotated locations for XP_006245096.1

    Conserved Domains (3) summary
    PRK14971
    Location:65 → 180
    PRK14971; DNA polymerase III subunit gamma/tau
    pfam05109
    Location:803 → 916
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam13891
    Location:337 → 401
    zf-C3Hc3H; Potential DNA-binding domain

  4. XM_039083646.2 → XP_038939574.1  INO80 complex subunit D isoform X2

    Conserved Domains (3) summary
    PRK14971
    Location:65 → 180
    PRK14971; DNA polymerase III subunit gamma/tau
    pfam05109
    Location:803 → 916
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam13891
    Location:337 → 401
    zf-C3Hc3H; Potential DNA-binding domain

  5. XM_006245032.5 → XP_006245094.1  INO80 complex subunit D isoform X1

    See identical proteins and their annotated locations for XP_006245094.1

    UniProtKB/TrEMBL
    D3ZTM2
    Conserved Domains (3) summary
    PRK14971
    Location:170 → 285
    PRK14971; DNA polymerase III subunit gamma/tau
    pfam05109
    Location:908 → 1021
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam13891
    Location:18 → 79
    zf-C3Hc3H; Potential DNA-binding domain

  6. XM_039083645.1 → XP_038939573.1  INO80 complex subunit D isoform X2

    Conserved Domains (3) summary
    PRK14971
    Location:65 → 180
    PRK14971; DNA polymerase III subunit gamma/tau
    pfam05109
    Location:803 → 916
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam13891
    Location:337 → 401
    zf-C3Hc3H; Potential DNA-binding domain

  7. XM_006245026.4 → XP_006245088.1  INO80 complex subunit D isoform X1

    See identical proteins and their annotated locations for XP_006245088.1

    UniProtKB/TrEMBL
    D3ZTM2
    Related
    ENSRNOP00000037428.4, ENSRNOT00000035879.7
    Conserved Domains (3) summary
    PRK14971
    Location:170 → 285
    PRK14971; DNA polymerase III subunit gamma/tau
    pfam05109
    Location:908 → 1021
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam13891
    Location:18 → 79
    zf-C3Hc3H; Potential DNA-binding domain

  8. XM_006245031.4 → XP_006245093.1  INO80 complex subunit D isoform X1

    See identical proteins and their annotated locations for XP_006245093.1

    UniProtKB/TrEMBL
    D3ZTM2
    Conserved Domains (3) summary
    PRK14971
    Location:170 → 285
    PRK14971; DNA polymerase III subunit gamma/tau
    pfam05109
    Location:908 → 1021
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam13891
    Location:18 → 79
    zf-C3Hc3H; Potential DNA-binding domain

  9. XM_006245029.4 → XP_006245091.1  INO80 complex subunit D isoform X1

    See identical proteins and their annotated locations for XP_006245091.1

    UniProtKB/TrEMBL
    D3ZTM2
    Conserved Domains (3) summary
    PRK14971
    Location:170 → 285
    PRK14971; DNA polymerase III subunit gamma/tau
    pfam05109
    Location:908 → 1021
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam13891
    Location:18 → 79
    zf-C3Hc3H; Potential DNA-binding domain

  10. XM_006245033.4 → XP_006245095.1  INO80 complex subunit D isoform X2

    See identical proteins and their annotated locations for XP_006245095.1

    Conserved Domains (3) summary
    PRK14971
    Location:65 → 180
    PRK14971; DNA polymerase III subunit gamma/tau
    pfam05109
    Location:803 → 916
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam13891
    Location:337 → 401
    zf-C3Hc3H; Potential DNA-binding domain
Nucleotide Protein Strain
Heading Accession and Version

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