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Plac1 placenta enriched 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 317316, updated on 5-Mar-2024

Summary

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Symbol
Plac1provided by RGD
Full Name
placenta enriched 1provided by RGD
Primary source
RGD:1563777
See related
Ensembl:ENSRNOG00000002379 AllianceGenome:RGD:1563777
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be involved in placenta development. Predicted to act upstream of or within spongiotrophoblast layer developmental growth. Predicted to be located in extracellular region. Orthologous to human PLAC1 (placenta enriched 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See Plac1 in Genome Data Viewer
Location:
Xq36
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (137740896..137874688, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (132821347..132955143, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (157931450..158133506)

Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102550366 Neighboring gene microRNA 503 Neighboring gene microRNA 322 Neighboring gene PABIR family member 2 Neighboring gene PABIR family member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Plac1 (placenta-specific 1) is essential for normal placental and embryonic development. Jackman SM, et al. Mol Reprod Dev, 2012 Aug. PMID 22729990, Free PMC Article
  2. PLAC1, an Xq26 gene with placenta-specific expression. Cocchia M, et al. Genomics, 2000 Sep 15. PMID 10995572
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in placenta development ISO
Inferred from Sequence Orthology
more info
  
involved_in placenta development ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within spongiotrophoblast layer developmental growth ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
placenta-specific protein 1
Names
placenta-specific 1
placenta-specific protein 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024894.1 → NP_001020065.1  placenta-specific protein 1 precursor

    See identical proteins and their annotated locations for NP_001020065.1

    Status: PROVISIONAL

    Source sequence(s)
    BC097979
    UniProtKB/Swiss-Prot
    Q4V7E2
    UniProtKB/TrEMBL
    A6KUJ7
    Related
    ENSRNOP00000093046.1, ENSRNOT00000114351.1
    Conserved Domains (1) summary
    cl27758
    Location:30 → 121
    Zona_pellucida; Zona pellucida-like domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086039.1 Reference GRCr8

    Range
    137740896..137874688 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017602056.3 → XP_017457545.1  placenta-specific protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q4V7E2
    UniProtKB/TrEMBL
    A6KUJ7
    Related
    ENSRNOP00000064922.1
    Conserved Domains (1) summary
    cl27758
    Location:30 → 121
    Zona_pellucida; Zona pellucida-like domain
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q4V7E2.1 GenPept UniProtKB/Swiss-Prot:Q4V7E2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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