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Obscn obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF [ Rattus norvegicus (Norway rat) ]

Gene ID: 338458, updated on 2-May-2024

Summary

Symbol
Obscnprovided by RGD
Full Name
obscurin, cytoskeletal calmodulin and titin-interacting RhoGEFprovided by RGD
Primary source
RGD:631335
See related
Ensembl:ENSRNOG00000058068 AllianceGenome:RGD:631335
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1305774
Summary
Predicted to enable several functions, including cytoskeletal protein binding activity; phosphatidylinositol phosphate binding activity; and phosphatidylinositol-3,4-bisphosphate binding activity. Predicted to be involved in negative regulation of phosphatidylinositol 3-kinase signaling and protein autophosphorylation. Located in M band and Z disc. Orthologous to human OBSCN (obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Muscle (RPKM 1663.2) and Heart (RPKM 448.3) See more
Orthologs
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Genomic context

Location:
10q22
Exon count:
122
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (44273686..44419275, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (43774113..43919718, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (45353185..45483570, complement)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102555997 Neighboring gene tripartite motif-containing 17 Neighboring gene tripartite motif-containing 11 Neighboring gene uncharacterized LOC100911111 Neighboring gene iron-sulfur cluster assembly factor IBA57 Neighboring gene gap junction protein, gamma 2

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 
enables ankyrin binding ISO
Inferred from Sequence Orthology
more info
 
enables cadherin binding ISO
Inferred from Sequence Orthology
more info
 
enables guanyl-nucleotide exchange factor activity NAS
Non-traceable Author Statement
more info
PubMed 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
enables phosphatidylinositol bisphosphate binding ISO
Inferred from Sequence Orthology
more info
 
enables phosphatidylinositol-3,4,5-trisphosphate binding ISO
Inferred from Sequence Orthology
more info
 
enables phosphatidylinositol-3,4-bisphosphate binding ISO
Inferred from Sequence Orthology
more info
 
enables phosphatidylinositol-3-phosphate binding ISO
Inferred from Sequence Orthology
more info
 
enables phosphatidylinositol-4,5-bisphosphate binding ISO
Inferred from Sequence Orthology
more info
 
enables phosphatidylinositol-4-phosphate binding ISO
Inferred from Sequence Orthology
more info
 
enables phosphatidylinositol-5-phosphate binding ISO
Inferred from Sequence Orthology
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein kinase activity ISO
Inferred from Sequence Orthology
more info
 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 
enables titin binding ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in M band IDA
Inferred from Direct Assay
more info
PubMed 
located_in M band ISO
Inferred from Sequence Orthology
more info
 
located_in Z disc IDA
Inferred from Direct Assay
more info
PubMed 
located_in Z disc ISO
Inferred from Sequence Orthology
more info
 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in extracellular space ISO
Inferred from Sequence Orthology
more info
 
located_in intercalated disc ISO
Inferred from Sequence Orthology
more info
 
located_in nuclear body IEA
Inferred from Electronic Annotation
more info
 
located_in nuclear body ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in sarcolemma ISO
Inferred from Sequence Orthology
more info
 
located_in sarcomere IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
obscurin
Names
obscurin-like
XP_038943147.1
XP_038943148.1
XP_038943169.1
XP_038943171.1
XP_038943173.1
XP_038943174.1
XP_038943176.1
XP_038943177.1
XP_038943178.1
XP_063126174.1
XP_063126175.1
XP_063126176.1
XP_063126177.1
XP_063126178.1
XP_063126179.1
XP_063126180.1
XP_063126181.1
XP_063126182.1
XP_063126183.1
XP_063126184.1
XP_063126185.1
XP_063126186.1
XP_063126187.1
XP_063126188.1
XP_063126189.1
XP_063126190.1
XP_063126191.1
XP_063126192.1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    44273686..44419275 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063270116.1XP_063126186.1  obscurin isoform X15

  2. XM_063270112.1XP_063126182.1  obscurin isoform X10

  3. XM_063270115.1XP_063126185.1  obscurin isoform X14

  4. XM_063270118.1XP_063126188.1  obscurin isoform X17

  5. XM_063270109.1XP_063126179.1  obscurin isoform X7

  6. XM_063270114.1XP_063126184.1  obscurin isoform X13

  7. XM_063270110.1XP_063126180.1  obscurin isoform X8

  8. XM_063270111.1XP_063126181.1  obscurin isoform X9

  9. XM_039087250.1XP_038943178.1  obscurin isoform X24

    Conserved Domains (11) summary
    cd12025
    Location:59836045
    SH3_Obscurin_like; Src homology 3 domain of Obscurin and similar proteins
    smart00060
    Location:79177995
    FN3; Fibronectin type 3 domain
    cd00063
    Location:48654950
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd13239
    Location:62636387
    PH_Obscurin; Obscurin pleckstrin homology (PH) domain
    pfam07679
    Location:998
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:64886567
    Ig_3; Immunoglobulin domain
    cd00096
    Location:984986
    Ig; Ig strand A [structural motif]
    cd20971
    Location:63956485
    IgI_1_Titin-A168_like; First immunoglobulin-like domains A168 within the A-band segment of human cardiac titin, and similar domains; a member of the I-set of IgSF domains
    cl02571
    Location:60786254
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cl11960
    Location:9841065
    Ig; Immunoglobulin domain
    cl21453
    Location:68507106
    PKc_like; Protein Kinases, catalytic domain
  10. XM_039087246.1XP_038943174.1  obscurin isoform X21

    Conserved Domains (11) summary
    cd12025
    Location:62476309
    SH3_Obscurin_like; Src homology 3 domain of Obscurin and similar proteins
    smart00060
    Location:81818259
    FN3; Fibronectin type 3 domain
    cd00063
    Location:51295214
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd13239
    Location:65276651
    PH_Obscurin; Obscurin pleckstrin homology (PH) domain
    pfam07679
    Location:998
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:67526831
    Ig_3; Immunoglobulin domain
    cd00096
    Location:984986
    Ig; Ig strand A [structural motif]
    cd20971
    Location:66596749
    IgI_1_Titin-A168_like; First immunoglobulin-like domains A168 within the A-band segment of human cardiac titin, and similar domains; a member of the I-set of IgSF domains
    cl02571
    Location:63426518
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cl11960
    Location:9841065
    Ig; Immunoglobulin domain
    cl21453
    Location:71147370
    PKc_like; Protein Kinases, catalytic domain
  11. XM_039087249.1XP_038943177.1  obscurin isoform X23

    Conserved Domains (11) summary
    cd12025
    Location:60716133
    SH3_Obscurin_like; Src homology 3 domain of Obscurin and similar proteins
    smart00060
    Location:80058083
    FN3; Fibronectin type 3 domain
    cd00063
    Location:49535038
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd13239
    Location:63516475
    PH_Obscurin; Obscurin pleckstrin homology (PH) domain
    pfam07679
    Location:998
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:65766655
    Ig_3; Immunoglobulin domain
    cd00096
    Location:984986
    Ig; Ig strand A [structural motif]
    cd20971
    Location:64836573
    IgI_1_Titin-A168_like; First immunoglobulin-like domains A168 within the A-band segment of human cardiac titin, and similar domains; a member of the I-set of IgSF domains
    cl02571
    Location:61666342
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cl11960
    Location:9841065
    Ig; Immunoglobulin domain
    cl21453
    Location:69387194
    PKc_like; Protein Kinases, catalytic domain
  12. XM_039087245.1XP_038943173.1  obscurin isoform X20

    Conserved Domains (11) summary
    cd12025
    Location:63356397
    SH3_Obscurin_like; Src homology 3 domain of Obscurin and similar proteins
    smart00060
    Location:82698347
    FN3; Fibronectin type 3 domain
    cd00063
    Location:52175302
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd13239
    Location:66156739
    PH_Obscurin; Obscurin pleckstrin homology (PH) domain
    pfam07679
    Location:998
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:68406919
    Ig_3; Immunoglobulin domain
    cd00096
    Location:984986
    Ig; Ig strand A [structural motif]
    cd20971
    Location:67476837
    IgI_1_Titin-A168_like; First immunoglobulin-like domains A168 within the A-band segment of human cardiac titin, and similar domains; a member of the I-set of IgSF domains
    cl02571
    Location:64306606
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cl11960
    Location:9841065
    Ig; Immunoglobulin domain
    cl21453
    Location:72027458
    PKc_like; Protein Kinases, catalytic domain
  13. XM_039087248.1XP_038943176.1  obscurin isoform X22

    Conserved Domains (11) summary
    cd12025
    Location:61596221
    SH3_Obscurin_like; Src homology 3 domain of Obscurin and similar proteins
    smart00060
    Location:80938171
    FN3; Fibronectin type 3 domain
    cd00063
    Location:50415126
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd13239
    Location:64396563
    PH_Obscurin; Obscurin pleckstrin homology (PH) domain
    pfam07679
    Location:998
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:66646743
    Ig_3; Immunoglobulin domain
    cd00096
    Location:984986
    Ig; Ig strand A [structural motif]
    cd20971
    Location:65716661
    IgI_1_Titin-A168_like; First immunoglobulin-like domains A168 within the A-band segment of human cardiac titin, and similar domains; a member of the I-set of IgSF domains
    cl02571
    Location:62546430
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cl11960
    Location:9841065
    Ig; Immunoglobulin domain
    cl21453
    Location:70267282
    PKc_like; Protein Kinases, catalytic domain
  14. XM_039087243.1XP_038943171.1  obscurin isoform X19

    Conserved Domains (11) summary
    cd12025
    Location:64236485
    SH3_Obscurin_like; Src homology 3 domain of Obscurin and similar proteins
    smart00060
    Location:83578435
    FN3; Fibronectin type 3 domain
    cd00063
    Location:53055390
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd13239
    Location:67036827
    PH_Obscurin; Obscurin pleckstrin homology (PH) domain
    pfam07679
    Location:998
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:69287007
    Ig_3; Immunoglobulin domain
    cd00096
    Location:984986
    Ig; Ig strand A [structural motif]
    cd20971
    Location:68356925
    IgI_1_Titin-A168_like; First immunoglobulin-like domains A168 within the A-band segment of human cardiac titin, and similar domains; a member of the I-set of IgSF domains
    cl02571
    Location:65186694
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cl11960
    Location:9841065
    Ig; Immunoglobulin domain
    cl21453
    Location:72907546
    PKc_like; Protein Kinases, catalytic domain
  15. XM_063270106.1XP_063126176.1  obscurin isoform X4

  16. XM_063270117.1XP_063126187.1  obscurin isoform X16

  17. XM_063270108.1XP_063126178.1  obscurin isoform X6

  18. XM_039087241.1XP_038943169.1  obscurin isoform X18

    Conserved Domains (11) summary
    cd12025
    Location:65136575
    SH3_Obscurin_like; Src homology 3 domain of Obscurin and similar proteins
    smart00060
    Location:84478525
    FN3; Fibronectin type 3 domain
    cd00063
    Location:53955480
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd13239
    Location:67936917
    PH_Obscurin; Obscurin pleckstrin homology (PH) domain
    pfam07679
    Location:998
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:70187097
    Ig_3; Immunoglobulin domain
    cd00096
    Location:984986
    Ig; Ig strand A [structural motif]
    cd20971
    Location:69257015
    IgI_1_Titin-A168_like; First immunoglobulin-like domains A168 within the A-band segment of human cardiac titin, and similar domains; a member of the I-set of IgSF domains
    cl02571
    Location:66086784
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cl11960
    Location:9841065
    Ig; Immunoglobulin domain
    cl21453
    Location:73807636
    PKc_like; Protein Kinases, catalytic domain
  19. XM_039087220.1XP_038943148.1  obscurin isoform X11

    Conserved Domains (11) summary
    cd12025
    Location:67776839
    SH3_Obscurin_like; Src homology 3 domain of Obscurin and similar proteins
    smart00060
    Location:87118789
    FN3; Fibronectin type 3 domain
    cd00063
    Location:56595744
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd13239
    Location:70577181
    PH_Obscurin; Obscurin pleckstrin homology (PH) domain
    pfam07679
    Location:998
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:72827361
    Ig_3; Immunoglobulin domain
    cd00096
    Location:984986
    Ig; Ig strand A [structural motif]
    cd20971
    Location:71897279
    IgI_1_Titin-A168_like; First immunoglobulin-like domains A168 within the A-band segment of human cardiac titin, and similar domains; a member of the I-set of IgSF domains
    cl02571
    Location:68727048
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cl11960
    Location:9841065
    Ig; Immunoglobulin domain
    cl21453
    Location:76447900
    PKc_like; Protein Kinases, catalytic domain
  20. XM_039087219.1XP_038943147.1  obscurin isoform X3

    Conserved Domains (11) summary
    cd12025
    Location:68656927
    SH3_Obscurin_like; Src homology 3 domain of Obscurin and similar proteins
    smart00060
    Location:87998877
    FN3; Fibronectin type 3 domain
    cd00063
    Location:57475832
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd13239
    Location:71457269
    PH_Obscurin; Obscurin pleckstrin homology (PH) domain
    pfam07679
    Location:998
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:73707449
    Ig_3; Immunoglobulin domain
    cd00096
    Location:984986
    Ig; Ig strand A [structural motif]
    cd20971
    Location:72777367
    IgI_1_Titin-A168_like; First immunoglobulin-like domains A168 within the A-band segment of human cardiac titin, and similar domains; a member of the I-set of IgSF domains
    cl02571
    Location:69607136
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cl11960
    Location:9841065
    Ig; Immunoglobulin domain
    cl21453
    Location:77327988
    PKc_like; Protein Kinases, catalytic domain
  21. XM_063270105.1XP_063126175.1  obscurin isoform X2

  22. XM_063270107.1XP_063126177.1  obscurin isoform X5

  23. XM_063270113.1XP_063126183.1  obscurin isoform X12

  24. XM_063270104.1XP_063126174.1  obscurin isoform X1

  25. XM_063270120.1XP_063126190.1  obscurin isoform X25

  26. XM_063270119.1XP_063126189.1  obscurin isoform X25

  27. XM_063270122.1XP_063126192.1  obscurin isoform X27

  28. XM_063270121.1XP_063126191.1  obscurin isoform X26