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Gjd3 gap junction protein, delta 3 [ Mus musculus (house mouse) ]

Gene ID: 353155, updated on 12-May-2024

Summary

Official Symbol
Gjd3provided by MGI
Official Full Name
gap junction protein, delta 3provided by MGI
Primary source
MGI:MGI:2384150
See related
Ensembl:ENSMUSG00000047197 AllianceGenome:MGI:2384150
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Cxnr; Gjc1; Gja11; cx30.2
Summary
Enables gap junction channel activity involved in AV node cell-bundle of His cell electrical coupling and ion channel activity. Involved in negative regulation of cell communication by electrical coupling involved in cardiac conduction and regulation of heart contraction. Located in gap junction. Part of connexin complex. Is expressed in heart. Orthologous to human GJD3 (gap junction protein delta 3). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See Gjd3 in Genome Data Viewer
Location:
11 D; 11 62.89 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (98870773..98873846, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (98979947..98983020, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene retinoic acid receptor, alpha Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:98803426-98803613 Neighboring gene STARR-positive B cell enhancer ABC_E9373 Neighboring gene predicted gene, 46294 Neighboring gene STARR-seq mESC enhancer starr_30692 Neighboring gene predicted gene, 22061 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:98824669-98824852 Neighboring gene STARR-seq mESC enhancer starr_30695 Neighboring gene topoisomerase (DNA) II alpha Neighboring gene STARR-positive B cell enhancer ABC_E17 Neighboring gene predicted gene, 23451 Neighboring gene insulin-like growth factor binding protein 4

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in anchoring junction IEA
Inferred from Electronic Annotation
more info
 
located_in cell surface ISO
Inferred from Sequence Orthology
more info
 
located_in cell surface ISS
Inferred from Sequence or Structural Similarity
more info
 
part_of connexin complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of connexin complex IGI
Inferred from Genetic Interaction
more info
PubMed 
part_of connexin complex ISO
Inferred from Sequence Orthology
more info
 
part_of connexin complex ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in gap junction IDA
Inferred from Direct Assay
more info
PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
gap junction delta-3 protein
Names
connexin 30.2
connexin r
gap junction alpha-11 protein
gap junction chi-1 protein
gap junction membrane channel protein chi 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_178596.3NP_848711.2  gap junction delta-3 protein

    See identical proteins and their annotated locations for NP_848711.2

    Status: VALIDATED

    Source sequence(s)
    AL591067
    Consensus CDS
    CCDS25369.1
    UniProtKB/Swiss-Prot
    Q80ZH0, Q91YD1
    UniProtKB/TrEMBL
    A0A654IET7
    Related
    ENSMUSP00000055246.2, ENSMUST00000062931.2
    Conserved Domains (1) summary
    pfam00029
    Location:3214
    Connexin

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    98870773..98873846 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)