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Ercc4l1 excision repair cross-complementing rodent repair deficiency, complementation group 4-like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 360465, discontinued on 31-Mar-2021

Summary

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Symbol
Ercc4l1provided by RGD
Full Name
excision repair cross-complementing rodent repair deficiency, complementation group 4-like 1provided by RGD
Primary source
RGD:1304845
Gene type
protein coding
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Kidney (RPKM 80.8), Spleen (RPKM 77.2) and 9 other tissues See more
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Genomic context

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See Ercc4l1 in Genome Data Viewer
Location:
10q11
Exon count:
10
Annotation release Status Assembly Chr Location
106 latest, but not current Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (92631..117648)
106 latest, but not current Rn_Celera (GCF_000002265.2) 10 AC_000078.1 (23398..46137)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General protein information

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Names
excision repair cross-complementing rodent repair deficiency, complementation group 4-like 1
DNA repair endonuclease XPF
DNA repair endonuclease XPF-like
excision repair cross-complementing rodent repair deficiency, complementation group 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 (NOTE: not current)

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005109.4 Reference Rnor_6.0 Primary Assembly

    Range
    92631..117648
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017597783.1 → XP_017453272.1  

Alternate Rn_Celera

Genomic

  1. AC_000078.1 Alternate Rn_Celera

    Range
    23398..46137
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017603951.1 → XP_017459440.1  

Gene LinkOut

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