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Fbxo47 F-box protein 47 [ Rattus norvegicus (Norway rat) ]

Gene ID: 360615, updated on 5-Mar-2024

Summary

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Official Symbol
Fbxo47provided by RGD
Official Full Name
F-box protein 47provided by RGD
Primary source
RGD:1559709
See related
Ensembl:ENSRNOG00000036882 AllianceGenome:RGD:1559709
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1559709
Summary
Orthologous to human FBXO47 (F-box protein 47). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Testes (RPKM 8.8), Spleen (RPKM 4.3) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Fbxo47 in Genome Data Viewer
Location:
10q31
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (83331750..83376669, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (82849514..82880337, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (85798987..85829770, complement)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene transfer RNA cysteine (anticodon GCA) 34 Neighboring gene transfer RNA cysteine (anticodon GCA) 35 Neighboring gene LIM and SH3 protein 1 Neighboring gene U7 small nuclear RNA Neighboring gene plexin domain containing 1 Neighboring gene transfer RNA cysteine (anticodon GCA) 36

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
F-box only protein 47

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    83331750..83376669 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063270147.1 → XP_063126217.1  F-box only protein 47 isoform X2

  2. XM_039087733.2 → XP_038943661.1  F-box only protein 47 isoform X1

    UniProtKB/TrEMBL
    D4AA98
    Related
    ENSRNOP00000052246.5
    Conserved Domains (1) summary
    pfam00646
    Location:47 → 78
    F-box; F-box domain

  3. XM_039087734.2 → XP_038943662.1  F-box only protein 47 isoform X2

  4. XM_039087732.2 → XP_038943660.1  F-box only protein 47 isoform X1

    UniProtKB/TrEMBL
    D4AA98
    Conserved Domains (1) summary
    pfam00646
    Location:47 → 78
    F-box; F-box domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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