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C15h14orf119 similar to human chromosome 14 open reading frame 119 [ Rattus norvegicus (Norway rat) ]

Gene ID: 361038, updated on 4-Apr-2024

Summary

Official Symbol
C15h14orf119provided by RGD
Official Full Name
similar to human chromosome 14 open reading frame 119provided by RGD
Primary source
RGD:1308430
See related
Ensembl:ENSRNOG00000029146 AllianceGenome:RGD:1308430
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1308430
Summary
Predicted to be located in cytosol and mitochondrion. Orthologous to human C14orf119 (chromosome 14 open reading frame 119). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Thymus (RPKM 232.5), Spleen (RPKM 198.8) and 9 other tissues See more
Orthologs
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Genomic context

See C15h14orf119 in Genome Data Viewer
Location:
15p13
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 15 NC_086033.1 (32116220..32121425)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 15 NC_051350.1 (28146368..28151422)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (33333009..33337677)

Chromosome 15 - NC_086033.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene cadherin 24 Neighboring gene apoptotic chromatin condensation inducer 1 Neighboring gene ciliated left-right organizer metallopeptidase Neighboring gene uncharacterized LOC120096982 Neighboring gene CCAAT/enhancer binding protein epsilon Neighboring gene solute carrier family 7 member 8

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
uncharacterized protein C14orf119 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108376.3NP_001101846.1  uncharacterized protein C14orf119 homolog

    See identical proteins and their annotated locations for NP_001101846.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000015
    UniProtKB/TrEMBL
    A0A8I5ZNS3, A6KGV7, B0BN25
    Related
    ENSRNOP00000045776.3, ENSRNOT00000049927.4
    Conserved Domains (1) summary
    pfam14969
    Location:38135
    DUF4508; Domain of unknown function (DUF4508)
  2. NM_001428981.1NP_001415910.1  uncharacterized protein C14orf119 homolog

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000015

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086033.1 Reference GRCr8

    Range
    32116220..32121425
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039093485.2XP_038949413.2  uncharacterized protein C14orf119 homolog isoform X1