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Phf11 PHD finger protein 11 [ Rattus norvegicus (Norway rat) ]

Gene ID: 361051, updated on 13-Apr-2024

Summary

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Symbol
Phf11provided by RGD
Full Name
PHD finger protein 11provided by RGD
Primary source
RGD:1310853
See related
Ensembl:ENSRNOG00000053891 AllianceGenome:RGD:1310853
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Phf11a
Summary
Predicted to enable metal ion binding activity. Predicted to be located in nuclear membrane and nucleoplasm. Predicted to be active in nucleus. Orthologous to human PHF11 (PHD finger protein 11). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Spleen (RPKM 174.5), Liver (RPKM 101.5) and 9 other tissues See more
Orthologs
human all
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Genomic context

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See Phf11 in Genome Data Viewer
Location:
15p12
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 15 NC_086033.1 (37568090..37592490, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 15 NC_051350.1 (33390290..33414647, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (38692817..39683417, complement)

Chromosome 15 - NC_086033.1Genomic Context describing neighboring genes Neighboring gene PHD finger protein 11-like Neighboring gene PHD finger protein 11-like Neighboring gene PHD finger protein 11B like 1 Neighboring gene PHD finger protein 11-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nuclear membrane ISO
Inferred from Sequence Orthology
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
PHD finger protein 11
Names
PHD finger protein 11 family member-like
PHD finger protein 11a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024272.2 → NP_001019443.1  PHD finger protein 11

    See identical proteins and their annotated locations for NP_001019443.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000015
    UniProtKB/Swiss-Prot
    Q5I0E2
    UniProtKB/TrEMBL
    A0A8I6AHQ0
    Related
    ENSRNOP00000086591.1, ENSRNOT00000114019.1
    Conserved Domains (1) summary
    cl22851
    Location:28 → 142
    PHD_SF; PHD finger superfamily

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086033.1 Reference GRCr8

    Range
    37568090..37592490 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039093501.2 → XP_038949429.1  PHD finger protein 11 isoform X1

    Conserved Domains (1) summary
    cl22851
    Location:28 → 142
    PHD_SF; PHD finger superfamily
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5I0E2.1 GenPept UniProtKB/Swiss-Prot:Q5I0E2

Gene LinkOut

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