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C15h8orf58 similar to human chromosome 8 open reading frame 58 [ Rattus norvegicus (Norway rat) ]

Gene ID: 361066, updated on 3-Apr-2024

Summary

Official Symbol
C15h8orf58provided by RGD
Official Full Name
similar to human chromosome 8 open reading frame 58provided by RGD
Primary source
RGD:1308117
See related
Ensembl:ENSRNOG00000008351 AllianceGenome:RGD:1308117
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1308117
Summary
Orthologous to human C8orf58 (chromosome 8 open reading frame 58). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Adrenal (RPKM 50.1), Lung (RPKM 41.8) and 9 other tissues See more
Orthologs
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Genomic context

See C15h8orf58 in Genome Data Viewer
Location:
15p11
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 15 NC_086033.1 (51638336..51645141, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 15 NC_051350.1 (45228615..45235274, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (51834703..51841412, complement)

Chromosome 15 - NC_086033.1Genomic Context describing neighboring genes Neighboring gene bridging integrator 3 Neighboring gene cell cycle and apoptosis regulator 2 Neighboring gene PDZ and LIM domain 2 Neighboring gene uncharacterized LOC134482142 Neighboring gene sorbin and SH3 domain containing 3

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
uncharacterized protein C8orf58 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001134571.4NP_001128043.2  uncharacterized protein C8orf58 homolog

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000015
    UniProtKB/TrEMBL
    A6HTJ0
    Conserved Domains (1) summary
    pfam15552
    Location:78364
    DUF4657; Domain of unknown function (DUF4657)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086033.1 Reference GRCr8

    Range
    51638336..51645141 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063274432.1XP_063130502.1  uncharacterized protein C8orf58 homolog isoform X2

  2. XM_006252278.5XP_006252340.1  uncharacterized protein C8orf58 homolog isoform X3

    UniProtKB/TrEMBL
    A6HTJ0, D4A3I2
    Related
    ENSRNOP00000011277.7
    Conserved Domains (1) summary
    pfam15552
    Location:78365
    DUF4657; Domain of unknown function (DUF4657)
  3. XM_063274431.1XP_063130501.1  uncharacterized protein C8orf58 homolog isoform X1