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Vat1l vesicle amine transport 1-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 361414, updated on 13-Apr-2024

Summary

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Official Symbol
Vat1lprovided by RGD
Official Full Name
vesicle amine transport 1-likeprovided by RGD
Primary source
RGD:1598315
See related
Ensembl:ENSRNOG00000011989 AllianceGenome:RGD:1598315
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable oxidoreductase activity and zinc ion binding activity. Orthologous to human VAT1L (vesicle amine transport 1 like). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Brain (RPKM 269.7), Adrenal (RPKM 31.5) and 1 other tissue See more
Orthologs
human mouse all
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Genomic context

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See Vat1l in Genome Data Viewer
Location:
19q12
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (59103636..59272950)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (42194511..42363835)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (46525895..46693838)

Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif, 18 Neighboring gene S-phase kinase-associated protein 1, pseudogene 2 Neighboring gene nudix hydrolase 7 Neighboring gene uncharacterized LOC120098537 Neighboring gene C-type lectin domain family 3, member A Neighboring gene WW domain-containing oxidoreductase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
synaptic vesicle membrane protein VAT-1 homolog-like
Names
vesicle amine transport protein 1 homolog (T. californica)-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001400980.1 → NP_001387909.1  synaptic vesicle membrane protein VAT-1 homolog-like

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000019
    UniProtKB/TrEMBL
    M0R3N4
    Related
    ENSRNOP00000063952.3, ENSRNOT00000075628.5

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086037.1 Reference GRCr8

    Range
    59103636..59272950
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039098305.2 → XP_038954233.1  synaptic vesicle membrane protein VAT-1 homolog-like isoform X1

    UniProtKB/TrEMBL
    A6IZE1
    Conserved Domains (1) summary
    cd08275
    Location:1 → 295
    MDR3; Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

  2. XM_039098306.2 → XP_038954234.1  synaptic vesicle membrane protein VAT-1 homolog-like isoform X1

    UniProtKB/TrEMBL
    A6IZE1
    Conserved Domains (1) summary
    cd08275
    Location:1 → 295
    MDR3; Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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