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Pnma8a PNMA family member 8A [ Rattus norvegicus (Norway rat) ]

Gene ID: 361515, updated on 5-Mar-2024

Summary

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Official Symbol
Pnma8aprovided by RGD
Official Full Name
PNMA family member 8Aprovided by RGD
Primary source
RGD:1310803
See related
Ensembl:ENSRNOG00000027944 AllianceGenome:RGD:1310803
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Pnmal1; RGD1310803
Summary
Orthologous to human PNMA8A (PNMA family member 8A). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward (RPKM 98.5) See more
Orthologs
human mouse all
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Genomic context

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Location:
1q21
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (86763475..86771117)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (77629272..77643156)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (78883239..78896551)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene PNMA family member 8B Neighboring gene 60S ribosomal protein L32 pseudogene Neighboring gene ribosomal protein L28, pseudogene 12 Neighboring gene uncharacterized LOC120099771

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
paraneoplastic antigen-like protein 8A
Names
PNMA-like 1
PNMA-like protein 1
paraneoplastic Ma antigen family member 8A
paraneoplastic Ma antigen family-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108473.1 → NP_001101943.1  paraneoplastic antigen-like protein 8A

    See identical proteins and their annotated locations for NP_001101943.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473979
    UniProtKB/TrEMBL
    A6J8E6, A6J8E7, D3ZA53
    Related
    ENSRNOP00000034811.4, ENSRNOT00000029825.5
    Conserved Domains (1) summary
    pfam14893
    Location:5 → 357
    PNMA

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    86763475..86771117
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039081713.2 → XP_038937641.1  paraneoplastic antigen-like protein 8A isoform X1

    UniProtKB/TrEMBL
    A6J8E6, A6J8E7, D3ZA53
    Conserved Domains (1) summary
    pfam14893
    Location:5 → 357
    PNMA

  2. XM_039081710.2 → XP_038937638.1  paraneoplastic antigen-like protein 8A isoform X1

    UniProtKB/TrEMBL
    A6J8E6, A6J8E7, D3ZA53
    Conserved Domains (1) summary
    pfam14893
    Location:5 → 357
    PNMA

  3. XM_039081706.2 → XP_038937634.1  paraneoplastic antigen-like protein 8A isoform X1

    UniProtKB/TrEMBL
    A6J8E6, A6J8E7, D3ZA53
    Conserved Domains (1) summary
    pfam14893
    Location:5 → 357
    PNMA
Nucleotide Protein Strain
Heading Accession and Version

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