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Rusf1 RUS family member 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 361654, updated on 5-Mar-2024

Summary

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Official Symbol
Rusf1provided by RGD
Official Full Name
RUS family member 1provided by RGD
Primary source
RGD:1310127
See related
Ensembl:ENSRNOG00000020144 AllianceGenome:RGD:1310127
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1310127
Summary
Predicted to be integral component of membrane. Orthologous to human RUSF1 (RUS family member 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Kidney (RPKM 328.4), Lung (RPKM 136.2) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Rusf1 in Genome Data Viewer
Location:
1q37
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (192282708..192312119, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (182852257..182881652, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (199687775..199716205, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene armadillo repeat containing 5 Neighboring gene transforming growth factor beta 1 induced transcript 1 Neighboring gene solute carrier family 5 member 2 Neighboring gene uncharacterized LOC120099940 Neighboring gene alpha hemoglobin stabilizing protein Neighboring gene uncharacterized LOC134485178 Neighboring gene uncharacterized LOC103691239

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Defining the membrane proteome of NK cells. Ghosh D, et al. J Mass Spectrom, 2010 Jan. PMID 19946888
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC124784

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
RUS family member 1
Names
RUS1 family protein C16orf58 homolog
UPF0420 protein C16orf58 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001035517.1 → NP_001030594.1  RUS family member 1

    See identical proteins and their annotated locations for NP_001030594.1

    Status: PROVISIONAL

    Source sequence(s)
    BC099813
    UniProtKB/Swiss-Prot
    Q499P8
    UniProtKB/TrEMBL
    A6I9Z8, G3V8P5
    Related
    ENSRNOP00000027290.4, ENSRNOT00000027290.6
    Conserved Domains (1) summary
    pfam04884
    Location:66 → 301
    DUF647; Vitamin B6 photo-protection and homoeostasis

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    192282708..192312119 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039083001.2 → XP_038938929.1  RUS family member 1 isoform X1

    Conserved Domains (1) summary
    pfam04884
    Location:23 → 225
    DUF647; Vitamin B6 photo-protection and homoeostasis

  2. XM_039083016.2 → XP_038938944.1  RUS family member 1 isoform X2

    Conserved Domains (1) summary
    pfam04884
    Location:61 → 240
    DUF647; Vitamin B6 photo-protection and homoeostasis

RNA

  1. XR_010054649.1 RNA Sequence

  2. XR_005488847.2 RNA Sequence

  3. XR_010054651.1 RNA Sequence

  4. XR_010054650.1 RNA Sequence

  5. XR_005488850.2 RNA Sequence

  6. XR_005488849.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q499P8.1 GenPept UniProtKB/Swiss-Prot:Q499P8

Gene LinkOut

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