Ybey ybeY metalloendoribonuclease [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Ybeyprovided by RGD
Official Full Name: ybeY metalloendoribonucleaseprovided by RGD
Primary source: RGD:1308722
See related: Ensembl:ENSRNOG00000021365 AllianceGenome:RGD:1308722
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1308722
Summary: Predicted to enable endoribonuclease activity. Predicted to be involved in RNA phosphodiester bond hydrolysis, endonucleolytic; proteolysis; and rRNA processing. Predicted to be located in nucleus. Orthologous to human YBEY (ybeY metalloendoribonuclease). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Kidney (RPKM 20.8), Lung (RPKM 18.1) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 20p12

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	20	NC_086038.1 (12164678..12175150)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	20	NC_051355.1 (12165192..12174713)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	20	NC_005119.4 (12917111..12926587)

Chromosome 20 - NC_086038.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

ORF66 (e-PCR), detects polymorphism
- UniSTS:259120

AW530645 (e-PCR)
- UniSTS:244549

BF398822 (e-PCR)
- UniSTS:246948

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables RNA endonuclease activity	ISO Inferred from Sequence Orthology more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables metalloendopeptidase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in rRNA processing	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: endoribonuclease YbeY

Names: putative ribonuclease; rRNA maturation factor homolog; ybeY metallopeptidase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.