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Krba1 KRAB-A domain containing 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 362358, updated on 3-Apr-2024

Summary

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Official Symbol
Krba1provided by RGD
Official Full Name
KRAB-A domain containing 1provided by RGD
Primary source
RGD:1306967
See related
Ensembl:ENSRNOG00000007405 AllianceGenome:RGD:1306967
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1306967
Summary
Orthologous to human KRBA1 (KRAB-A domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Thymus (RPKM 65.7), Testes (RPKM 57.7) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Krba1 in Genome Data Viewer
Location:
4q24
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (78672384..78693984)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (77341654..77363075)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (78024867..78046330)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134486766 Neighboring gene transfer RNA cysteine (anticodon GCA) 27 Neighboring gene transfer RNA cysteine (anticodon GCA) 28 Neighboring gene zinc finger protein 467 Neighboring gene SCO-spondin Neighboring gene uncharacterized LOC120102263

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
protein KRBA1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    78672384..78693984
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063286958.1 → XP_063143028.1  protein KRBA1 isoform X13

  2. XM_063286953.1 → XP_063143023.1  protein KRBA1 isoform X7

  3. XM_063286956.1 → XP_063143026.1  protein KRBA1 isoform X11

  4. XM_063286948.1 → XP_063143018.1  protein KRBA1 isoform X2

  5. XM_063286957.1 → XP_063143027.1  protein KRBA1 isoform X12

  6. XM_039108658.2 → XP_038964586.1  protein KRBA1 isoform X1

    UniProtKB/TrEMBL
    A6K0E3
    Related
    ENSRNOP00000040855.5
    Conserved Domains (1) summary
    pfam15287
    Location:250 → 292
    KRBA1; KRBA1 family repeat

  7. XM_063286951.1 → XP_063143021.1  protein KRBA1 isoform X4

  8. XM_063286952.1 → XP_063143022.1  protein KRBA1 isoform X6

  9. XM_063286950.1 → XP_063143020.1  protein KRBA1 isoform X3

    UniProtKB/TrEMBL
    D4A2C1

  10. XM_006236447.5 → XP_006236509.1  protein KRBA1 isoform X5

    See identical proteins and their annotated locations for XP_006236509.1

    UniProtKB/TrEMBL
    A6K0E3
    Conserved Domains (3) summary
    smart00349
    Location:8 → 64
    KRAB; krueppel associated box
    pfam01352
    Location:8 → 46
    KRAB; KRAB box
    pfam15287
    Location:229 → 271
    KRBA1; KRBA1 family repeat

  11. XM_063286954.1 → XP_063143024.1  protein KRBA1 isoform X8

  12. XM_006236448.5 → XP_006236510.1  protein KRBA1 isoform X9

    See identical proteins and their annotated locations for XP_006236510.1

    UniProtKB/TrEMBL
    A6K0E3
    Related
    ENSRNOP00000097535.1
    Conserved Domains (1) summary
    pfam15287
    Location:194 → 236
    KRBA1; KRBA1 family repeat

  13. XM_039108660.2 → XP_038964588.1  protein KRBA1 isoform X9

    UniProtKB/TrEMBL
    A6K0E3
    Conserved Domains (1) summary
    pfam15287
    Location:194 → 236
    KRBA1; KRBA1 family repeat

  14. XM_063286955.1 → XP_063143025.1  protein KRBA1 isoform X10

    UniProtKB/TrEMBL
    A0A8I6ASV2

  15. XM_039108661.2 → XP_038964589.1  protein KRBA1 isoform X9

    UniProtKB/TrEMBL
    A6K0E3
    Conserved Domains (1) summary
    pfam15287
    Location:194 → 236
    KRBA1; KRBA1 family repeat
Nucleotide Protein Strain
Heading Accession and Version

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