U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Vgll1 vestigial-like family member 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 363508, updated on 5-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
Vgll1provided by RGD
Official Full Name
vestigial-like family member 1provided by RGD
Primary source
RGD:1564038
See related
AllianceGenome:RGD:1564038
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1564038
Summary
Predicted to enable protein C-terminus binding activity. Predicted to be located in nucleoplasm. Orthologous to human VGLL1 (vestigial like family member 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward (RPKM 1.3) See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
Xq36
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (140016938..140036348)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (134979657..134996007)
106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (159556296..159576639)

Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene bombesin receptor subtype 3 Neighboring gene high mobility group nucleosomal binding domain 4, pseudogene 5 Neighboring gene HIV-1 Tat specific factor 1 Neighboring gene heat shock protein 90 alpha family class B member 1, pseudogene 15 Neighboring gene CD40 ligand

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A Sveinsson's chorioretinal atrophy-associated missense mutation in mouse Tead1 affects its interaction with the co-factors YAP and TAZ. Kitagawa M. Biochem Biophys Res Commun, 2007 Oct 5. PMID 17689488

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  

General protein information

Go to the top of the page Help
Preferred Names
transcription cofactor vestigial-like protein 1
Names
vestigial like 1 homolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086039.1 Reference GRCr8

    Range
    140016938..140036348
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008773668.3 → XP_008771890.2  transcription cofactor vestigial-like protein 1

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Miscellaneous