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Pilrb2l5 paired immunoglobin like type 2 receptor beta 2 like 5 [ Rattus norvegicus (Norway rat) ]

Gene ID: 363899, updated on 29-Feb-2024

Summary

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Official Symbol
Pilrb2l5provided by RGD
Official Full Name
paired immunoglobin like type 2 receptor beta 2 like 5provided by RGD
Primary source
RGD:1562525
See related
AllianceGenome:RGD:1562525
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1562525
Expression
Biased expression in Spleen (RPKM 35.2), Lung (RPKM 20.2) and 8 other tissues See more
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Genomic context

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Location:
12q12
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (23340135..23348169, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (17674860..17682715, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (20569642..20572926, complement)

Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene paired immunoglobulin-like type 2 receptor beta Neighboring gene paired immunoglobulin-like type 2 receptor beta Neighboring gene paired immunoglobin like type 2 receptor beta 2 like 1 Neighboring gene RAP1B, member of RAS oncogene family, pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in cell periphery IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
paired immunoglobulin-like type 2 receptor beta; similar to cell surface receptor FDFACT

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086030.1 Reference GRCr8

    Range
    23340135..23348169 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063271756.1 → XP_063127826.1  paired immunoglobulin-like type 2 receptor beta isoform X2

  2. XM_039089992.2 → XP_038945920.1  paired immunoglobulin-like type 2 receptor beta isoform X1

    UniProtKB/TrEMBL
    M0RAT3
    Conserved Domains (2) summary
    cd00096
    Location:28 → 32
    Ig; Ig strand A [structural motif]
    cl11960
    Location:28 → 122
    Ig; Immunoglobulin domain

  3. XM_039089991.2 → XP_038945919.1  paired immunoglobulin-like type 2 receptor beta isoform X1

    UniProtKB/TrEMBL
    M0RAT3
    Conserved Domains (2) summary
    cd00096
    Location:28 → 32
    Ig; Ig strand A [structural motif]
    cl11960
    Location:28 → 122
    Ig; Immunoglobulin domain

  4. XM_039089993.2 → XP_038945921.1  paired immunoglobulin-like type 2 receptor beta isoform X3

    Conserved Domains (2) summary
    cd00096
    Location:28 → 32
    Ig; Ig strand A [structural motif]
    cl11960
    Location:28 → 122
    Ig; Immunoglobulin domain
Nucleotide Protein Strain
Heading Accession and Version

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