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Btf3l4 basic transcription factor 3-like 4 [ Rattus norvegicus (Norway rat) ]

Gene ID: 366434, updated on 13-Apr-2024

Summary

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Official Symbol
Btf3l4provided by RGD
Official Full Name
basic transcription factor 3-like 4provided by RGD
Primary source
RGD:1311774
See related
Ensembl:ENSRNOG00000008512 AllianceGenome:RGD:1311774
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1311774
Summary
Orthologous to human BTF3L4 (basic transcription factor 3 like 4). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Kidney (RPKM 216.9), Liver (RPKM 184.4) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Btf3l4 in Genome Data Viewer
Location:
5q34
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (128796594..128816219, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (123567902..123587527, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (128432049..128450530, complement)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene coiled-coil and C2 domain containing 1B Neighboring gene zinc finger FYVE-type containing 9 Neighboring gene ribosomal protein L9, pseudogene 8 Neighboring gene thioredoxin domain containing 12 Neighboring gene KTI12 chromatin associated Neighboring gene RAB3B, member RAS oncogene family Neighboring gene uncharacterized LOC134486965

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. The sclerostin-bone protein interactome. Devarajan-Ketha H, et al. Biochem Biophys Res Commun, 2012 Jan 13. PMID 22206666, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
transcription factor BTF3 homolog 4
Names
Btf3l4 protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001399000.1 → NP_001385929.1  transcription factor BTF3 homolog 4

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000005
    UniProtKB/TrEMBL
    A6JYW3, D4A3I4
    Conserved Domains (1) summary
    cd22055
    Location:4 → 120
    NAC_BTF3; basal transcription factor BTF3

  2. NM_001399001.1 → NP_001385930.1  transcription factor BTF3 homolog 4

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000005
    UniProtKB/TrEMBL
    A6JYW3, D4A3I4
    Related
    ENSRNOP00000011272.5, ENSRNOT00000011272.8
    Conserved Domains (1) summary
    cd22055
    Location:4 → 120
    NAC_BTF3; basal transcription factor BTF3

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    128796594..128816219 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063288112.1 → XP_063144182.1  transcription factor BTF3 homolog 4 isoform X2

  2. XM_063288111.1 → XP_063144181.1  transcription factor BTF3 homolog 4 isoform X1

  3. XM_039111512.2 → XP_038967440.1  transcription factor BTF3 homolog 4 isoform X3

    UniProtKB/TrEMBL
    A0A0G2K4W2, A6JYW3, D4A3I4
    Conserved Domains (1) summary
    cd22055
    Location:4 → 120
    NAC_BTF3; basal transcription factor BTF3
Nucleotide Protein Strain
Heading Accession and Version

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