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Cpxcr1 CPX chromosome region, candidate 1 [ Mus musculus (house mouse) ]

Gene ID: 382239, updated on 5-Mar-2024

Summary

Official Symbol
Cpxcr1provided by MGI
Official Full Name
CPX chromosome region, candidate 1provided by MGI
Primary source
MGI:MGI:2685989
See related
Ensembl:ENSMUSG00000072995 AllianceGenome:MGI:2685989
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm1143
Summary
Orthologous to human CPXCR1 (CPX chromosome region candidate 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 3.2) See more
Orthologs
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Genomic context

Location:
X E1; X 49.48 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (115358641..115388480)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (116448944..116478783)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene histone H2A-Bbd type 2/3-like Neighboring gene STARR-seq mESC enhancer starr_47808 Neighboring gene predicted gene, 24624 Neighboring gene STARR-seq mESC enhancer starr_47809 Neighboring gene STARR-seq mESC enhancer starr_47810 Neighboring gene STARR-seq mESC enhancer starr_47812 Neighboring gene predicted gene, 52471 Neighboring gene H2A.B variant histone 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
CPX chromosomal region candidate gene 1 protein homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033471.3NP_001028643.2  CPX chromosomal region candidate gene 1 protein homolog

    See identical proteins and their annotated locations for NP_001028643.2

    Status: VALIDATED

    Source sequence(s)
    AK133001, AV270501, BX005471
    Consensus CDS
    CCDS30367.1
    UniProtKB/Swiss-Prot
    A2BEE6, B2RW29, Q3V0P1
    Related
    ENSMUSP00000098827.2, ENSMUST00000101269.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    115358641..115388480
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)