zgc:64051 zgc:64051 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zgc:64051provided by ZNC
Official Full Name: zgc:64051provided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-1349
See related: Ensembl:ENSDARG00000068233 AllianceGenome:ZFIN:ZDB-GENE-040426-1349
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary: Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including anterior axial hypoblast; blood; mesoderm; tail bud; and vasculature. Orthologous to human CD53 (CD53 molecule). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 5

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	5	NC_007116.7 (26869580..26879302, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	5	NC_007116.6 (26269427..26279149, complement)

Chromosome 5 - NC_007116.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: leukocyte surface antigen CD53

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_200371.1 → NP_956665.1 leukocyte surface antigen CD53

See identical proteins and their annotated locations for NP_956665.1

Status: PREDICTED

Source sequence(s)

BC053225

UniProtKB/TrEMBL

B2GRA1, F6P0Q6, Q7T376

Related

ENSDARP00000089342.4, ENSDART00000098571.6

Conserved Domains (2) summary

cd03164
Location:101 → 189

CD53_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model ...

pfam00335
Location:6 → 213

Tetraspannin; Tetraspanin family