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MGC75582 MGC75582, possible similarity to act2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 394982, updated on 25-Apr-2024

Summary

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Official Symbol
MGC75582provided by Xenbase
Official Full Name
MGC75582, possible similarity to act2provided by Xenbase
Primary source
Xenbase:XB-GENE-22063999
See related
Ensembl:ENSXETG00000027434
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
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Genomic context

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See MGC75582 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (145362911..145364727, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (132912105..132913922, complement)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene two pore segment channel 1 Neighboring gene IQ motif containing D Neighboring gene mediator complex subunit 13-like Neighboring gene uncharacterized LOC116406820 Neighboring gene T-box 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A processed gene coding for a sarcomeric actin in Xenopus laevis and Xenopus tropicalis. Stutz F, et al. EMBO J, 1987 Jul. PMID 3653078, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within mesenchyme migration ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within positive regulation of gene expression ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in cell body ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
located_in filopodium ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in lamellipodium ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
actin, alpha cardiac muscle 2
Names
actin alpha 2
actin, alpha sarcomeric/cardiac
alpha2T

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_204024.1 → NP_989355.1  actin, alpha cardiac muscle 2

    See identical proteins and their annotated locations for NP_989355.1

    Status: PROVISIONAL

    Source sequence(s)
    BC064152
    UniProtKB/Swiss-Prot
    P20399, Q6GSH4
    UniProtKB/TrEMBL
    A0A6I8RMY1
    Related
    ENSXETP00000097660.1, ENSXETT00000016355.4
    Conserved Domains (1) summary
    PTZ00281
    Location:4 → 377
    PTZ00281; actin; Provisional

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    145362911..145364727 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P20399.1 GenPept UniProtKB/Swiss-Prot:P20399

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases