Sapcd1 suppressor APC domain containing 1 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Sapcd1provided by RGD
Official Full Name: suppressor APC domain containing 1provided by RGD
Primary source: RGD:1359359
See related: Ensembl:ENSRNOG00000000858 AllianceGenome:RGD:1359359
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Ng23
Summary: Orthologous to human SAPCD1 (suppressor APC domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Heart (RPKM 65.2), Muscle (RPKM 34.4) and 8 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 20p12

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	20	NC_086038.1 (3798124..3800422)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	20	NC_051355.1 (3793980..3795767)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	20	NC_005119.4 (5018264..5020375, complement)

Chromosome 20 - NC_086038.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

BG372572 (e-PCR)
- UniSTS:248928

RH129081 (e-PCR)
- UniSTS:212389

General protein information

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Preferred Names: suppressor APC domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001004069.2 → NP_001004069.1 suppressor APC domain-containing protein 1

See identical proteins and their annotated locations for NP_001004069.1

Status: VALIDATED

Source sequence(s)

BX883045

UniProtKB/TrEMBL

A6KTQ8, A6KTQ9, Q6MG63

Related

ENSRNOP00000001146.3, ENSRNOT00000001146.7

Conserved Domains (1) summary

pfam11414
Location:35 → 114

Suppressor_APC; Adenomatous polyposis coli tumour suppressor protein

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086038.1 Reference GRCr8

Range

3798124..3800422

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_063279360.1 → XP_063135430.1 suppressor APC domain-containing protein 1 isoform X1
XM_063279361.1 → XP_063135431.1 suppressor APC domain-containing protein 1 isoform X2