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sil1.L SIL1 nucleotide exchange factor L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 414657, updated on 4-Jan-2025

Summary

Official Symbol
sil1.L
Official Full Name
SIL1 nucleotide exchange factor L homeolog
Primary source
Xenbase:XB-GENE-5898543
Locus tag
XELAEV_18039875mg
See related
EnsemblRapid:ENSXLAG00005035826 AllianceGenome:Xenbase:XB-GENE-5898543
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
sil1
Summary
Predicted to act upstream of or within protein transport. Predicted to be located in endoplasmic reticulum lumen. Human ortholog(s) of this gene implicated in primary cerebellar degeneration. Orthologous to human SIL1 (SIL1 nucleotide exchange factor). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

See sil1.L in Genome Data Viewer
Location:
chromosome: 8L
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (97552479..97556450, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8L NC_030738.1 (82876743..82880739, complement)

Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene mitotic deacetylase associated SANT domain protein L homeolog Neighboring gene transmembrane protein 62 L homeolog Neighboring gene ubiquitin protein ligase E3 component n-recognin 1 L homeolog Neighboring gene peripherin 2 like L homeolog

Genomic regions, transcripts, and products

General gene information

Clone Names

  • MGC81098

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in endoplasmic reticulum  
located_in endoplasmic reticulum lumen  

General protein information

Preferred Names
nucleotide exchange factor SIL1
Names
SIL1 homolog, endoplasmic reticulum chaperone

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091227.1NP_001084696.1  nucleotide exchange factor SIL1 precursor

    See identical proteins and their annotated locations for NP_001084696.1

    Status: PROVISIONAL

    Source sequence(s)
    BC068689
    UniProtKB/Swiss-Prot
    Q6NUA7
    Conserved Domains (1) summary
    PLN03200
    Location:242325
    PLN03200; cellulose synthase-interactive protein; Provisional

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    97552479..97556450 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018228819.2XP_018084308.1  nucleotide exchange factor SIL1 isoform X1

    UniProtKB/TrEMBL
    A0A1L8FAG4, A0A974C8K6
    Related
    ENSXLAP00005107138.1, ENSXLAT00005109250.1
    Conserved Domains (1) summary
    PLN03200
    Location:242325
    PLN03200; cellulose synthase-interactive protein; Provisional
  2. XM_018228818.2XP_018084307.1  nucleotide exchange factor SIL1 isoform X1

    UniProtKB/TrEMBL
    A0A1L8FAG4, A0A974C8K6
    Related
    ENSXLAP00005107164.1, ENSXLAT00005109276.1
    Conserved Domains (1) summary
    PLN03200
    Location:242325
    PLN03200; cellulose synthase-interactive protein; Provisional
  3. XM_041571989.1XP_041427923.1  nucleotide exchange factor SIL1 isoform X1

    UniProtKB/TrEMBL
    A0A1L8FAG4, A0A974C8K6
    Related
    ENSXLAP00005107158.1, ENSXLAT00005109270.1
    Conserved Domains (1) summary
    PLN03200
    Location:242325
    PLN03200; cellulose synthase-interactive protein; Provisional
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