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Ldlrad2 low density lipoprotein receptor class A domain containing 2 [ Mus musculus (house mouse) ]

Gene ID: 435811, updated on 5-Mar-2024

Summary

Official Symbol
Ldlrad2provided by MGI
Official Full Name
low density lipoprotein receptor class A domain containing 2provided by MGI
Primary source
MGI:MGI:3588210
See related
Ensembl:ENSMUSG00000094035 AllianceGenome:MGI:3588210
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human LDLRAD2 (low density lipoprotein receptor class A domain containing 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See Ldlrad2 in Genome Data Viewer
Location:
4 D3; 4 69.99 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (137298185..137309429, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (137570875..137582118, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700013G24 gene Neighboring gene predicted gene 13010 Neighboring gene STARR-positive B cell enhancer mm9_chr4:137024403-137024704 Neighboring gene STARR-seq mESC enhancer starr_11780 Neighboring gene perlecan (heparan sulfate proteoglycan 2) Neighboring gene STARR-positive B cell enhancer ABC_E4690 Neighboring gene microRNA 7018 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:137149587-137149696 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:137150478-137150661 Neighboring gene STARR-seq mESC enhancer starr_11788 Neighboring gene ubiquitin specific peptidase 48 Neighboring gene predicted gene, 54263 Neighboring gene Rap1 GTPase-activating protein Neighboring gene RAP1 GTPase activating protein, opposite strand

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
low-density lipoprotein receptor class A domain-containing protein 2
Names
low density lipoprotein receptor A domain containing 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033979.2NP_001029151.1  low-density lipoprotein receptor class A domain-containing protein 2 isoform 1

    See identical proteins and their annotated locations for NP_001029151.1

    Status: VALIDATED

    Source sequence(s)
    BX000694
    Consensus CDS
    CCDS18819.1
    UniProtKB/TrEMBL
    Q3V0V0
    Related
    ENSMUSP00000136854.2, ENSMUST00000178923.2
  2. NM_001405419.1NP_001392348.1  low-density lipoprotein receptor class A domain-containing protein 2 isoform 2 precursor

    Status: VALIDATED

    Source sequence(s)
    BX000694
    UniProtKB/TrEMBL
    A0A5F8MPH1
    Related
    ENSMUSP00000158970.2, ENSMUST00000238941.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    137298185..137309429 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)