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LINC01191 long intergenic non-protein coding RNA 1191 [ Homo sapiens (human) ]

Gene ID: 440900, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01191provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1191provided by HGNC
Primary source
HGNC:HGNC:49595
See related
Ensembl:ENSG00000234199 AllianceGenome:HGNC:49595
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
VIN; lnc-ACTR3
Expression
Restricted expression toward testis (RPKM 31.3) See more
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Genomic context

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Location:
2q14.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (113969322..114028082)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (114393965..114452869)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (114726899..114785659)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ACTR3 antisense RNA 1 Neighboring gene uncharacterized LOC124906071 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16428 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16429 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16430 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16431 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:114647589-114648244 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16432 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16433 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11890 Neighboring gene actin related protein 3 Neighboring gene Sharpr-MPRA regulatory region 10480 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16434 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11891 Neighboring gene long intergenic non-protein coding RNA 2992 Neighboring gene small nucleolar RNA U3 Neighboring gene uncharacterized LOC124907876 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:114859097-114859598 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:114859599-114860098 Neighboring gene NANOG hESC enhancer GRCh37_chr2:115006183-115006724 Neighboring gene selenophosphate synthetase 1 pseudogene 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Evidence for a crucial role of a host non-coding RNA in influenza A virus replication. Winterling C, et al. RNA Biol, 2014. PMID 24440876, Free PMC Article
  2. The long non-coding RNA LOC441204 enhances cell growth in human glioma. Lin TK, et al. Sci Rep, 2017 Jul 17. PMID 28717243, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • virus inducible lincRNa

Clone Names

  • AC010982.1, AC110769.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_034128.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010982, AC110769, AW016224
    Related
    ENST00000412690.1

  2. NR_148507.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010982, AC110769

  3. NR_148508.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010982, AC110769

  4. NR_148509.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010982, AC110769

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    113969322..114028082
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    114393965..114452869
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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