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Vom1r41 vomeronasal 1 receptor 41 [ Rattus norvegicus (Norway rat) ]

Gene ID: 494261, updated on 29-Feb-2024

Summary

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Symbol
Vom1r41provided by RGD
Full Name
vomeronasal 1 receptor 41provided by RGD
Primary source
RGD:1359462
See related
Ensembl:ENSRNOG00000064904 AllianceGenome:RGD:1359462
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
V1rg5
Summary
Predicted to enable pheromone receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and response to pheromone. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
1q21
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (80840854..80841774, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (71768665..71769585, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (67742949..67743932)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene vomeronasal 1 receptor 40 Neighboring gene vomeronasal 2 receptor, 32 Neighboring gene vomeronasal 1 receptor 4, pseudogene 1 Neighboring gene vomeronasal 2 receptor, 78

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Extreme variability among mammalian V1R gene families. Young JM, et al. Genome Res, 2010 Jan. PMID 19952141, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables pheromone receptor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
  
involved_in response to pheromone IEA
Inferred from Electronic Annotation
more info
  
involved_in sensory perception of chemical stimulus IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
vomeronasal 1 receptor 41; vomeronasal type-1 receptor 4
Names
vomernasal 1 receptor Vom1r41
vomeronasal 1 receptor, G5
vomeronasal V1r-type receptor V1rg5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    80840854..80841774 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039097305.1 → XP_038953233.1  vomeronasal type-1 receptor 4

    UniProtKB/TrEMBL
    A0A8I5Y964
    Related
    ENSRNOP00000076887.1, ENSRNOT00000105290.1
    Conserved Domains (2) summary
    cd14964
    Location:7 → 32
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:6 → 297
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001008909.1: Suppressed sequence

    Description
    NM_001008909.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
Nucleotide Protein Strain
Heading Accession and Version

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