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Cfap97d1 CFAP97 domain containing 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 498004, updated on 13-Apr-2024

Summary

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Official Symbol
Cfap97d1provided by RGD
Official Full Name
CFAP97 domain containing 1provided by RGD
Primary source
RGD:1565533
See related
Ensembl:ENSRNOG00000036796 AllianceGenome:RGD:1565533
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1565533
Summary
Predicted to be involved in sperm axoneme assembly. Orthologous to human CFAP97D1 (CFAP97 domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Testes (RPKM 45.5), Brain (RPKM 8.2) and 1 other tissue See more
Orthologs
human mouse all
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Genomic context

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See Cfap97d1 in Genome Data Viewer
Location:
10q32.1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (87432559..87444711)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (86933585..86944566)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (89918313..89930913)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene mesenchyme homeobox 1 Neighboring gene sclerostin Neighboring gene dual specificity phosphatase 3 Neighboring gene MAGUK p55 scaffold protein 3 Neighboring gene uncharacterized LOC134480879

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in sperm axoneme assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in sperm axoneme assembly ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
sperm axonemal maintenance protein CFAP97D1
Names
uncharacterized protein C17orf105 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001134601.2 → NP_001128073.2  sperm axonemal maintenance protein CFAP97D1

    See identical proteins and their annotated locations for NP_001128073.2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000010
    UniProtKB/TrEMBL
    D3ZAA8
    Related
    ENSRNOP00000052063.3, ENSRNOT00000055192.4
    Conserved Domains (1) summary
    pfam13879
    Location:35 → 130
    KIAA1430; KIAA1430 homolog

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    87432559..87444711
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039086640.2 → XP_038942568.1  sperm axonemal maintenance protein CFAP97D1 isoform X2

    Conserved Domains (1) summary
    pfam13879
    Location:35 → 99
    KIAA1430; KIAA1430 homolog

  2. XM_039086642.2 → XP_038942570.1  sperm axonemal maintenance protein CFAP97D1 isoform X4

    Conserved Domains (1) summary
    pfam13879
    Location:35 → 99
    KIAA1430; KIAA1430 homolog

  3. XM_039086641.2 → XP_038942569.1  sperm axonemal maintenance protein CFAP97D1 isoform X3

    Conserved Domains (1) summary
    pfam13879
    Location:35 → 99
    KIAA1430; KIAA1430 homolog

  4. XM_006247404.4 → XP_006247466.1  sperm axonemal maintenance protein CFAP97D1 isoform X1

    See identical proteins and their annotated locations for XP_006247466.1

    UniProtKB/TrEMBL
    D3ZAA8
    Conserved Domains (1) summary
    pfam13879
    Location:35 → 130
    KIAA1430; KIAA1430 homolog

  5. XM_006247405.5 → XP_006247467.1  sperm axonemal maintenance protein CFAP97D1 isoform X1

    See identical proteins and their annotated locations for XP_006247467.1

    UniProtKB/TrEMBL
    D3ZAA8
    Conserved Domains (1) summary
    pfam13879
    Location:35 → 130
    KIAA1430; KIAA1430 homolog
Nucleotide Protein Strain
Heading Accession and Version

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