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Slc35e1 solute carrier family 35, member E1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 498599, updated on 11-Apr-2024

Summary

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Official Symbol
Slc35e1provided by RGD
Official Full Name
solute carrier family 35, member E1provided by RGD
Primary source
RGD:1561342
See related
Ensembl:ENSRNOG00000012287 AllianceGenome:RGD:1561342
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1561342
Summary
Predicted to enable antiporter activity. Predicted to be involved in transmembrane transport. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human SLC35E1 (solute carrier family 35 member E1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Kidney (RPKM 77.8), Spleen (RPKM 77.1) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
16p14
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (17384980..17398227)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (17350938..17364185)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (19052321..19064596)

Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120097450 Neighboring gene mediator complex subunit 26 Neighboring gene uncharacterized LOC134482462 Neighboring gene calcium homeostasis endoplasmic reticulum protein Neighboring gene similar to human chromosome 19 open reading frame 44 Neighboring gene calreticulin 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of altered gene expression in rat soleus muscle atrophied by disuse. Cros N, et al. J Cell Biochem, 2001 Aug 21-Sep 5. PMID 11596118
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables antiporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
solute carrier family 35 member E1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109107.2 → NP_001102577.2  solute carrier family 35 member E1

    See identical proteins and their annotated locations for NP_001102577.2

    Status: VALIDATED

    Source sequence(s)
    AA925310, AW142386, BF406746, BF565650, CB316326, CB609486, CB780985, CR754900, DY319179, EV776552
    UniProtKB/Swiss-Prot
    P0C6B1
    UniProtKB/TrEMBL
    F1LSM2
    Related
    ENSRNOP00000016399.7, ENSRNOT00000016399.7
    Conserved Domains (1) summary
    cl26744
    Location:29 → 333
    TPT; Triose-phosphate Transporter family

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086034.1 Reference GRCr8

    Range
    17384980..17398227
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039094757.1 → XP_038950685.1  solute carrier family 35 member E1 isoform X2

    Conserved Domains (1) summary
    cl26744
    Location:29 → 245
    TPT; Triose-phosphate Transporter family

  2. XM_039094755.1 → XP_038950683.1  solute carrier family 35 member E1 isoform X1

    UniProtKB/TrEMBL
    F1LSM2
    Conserved Domains (1) summary
    cl26744
    Location:29 → 287
    TPT; Triose-phosphate Transporter family
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0C6B1.1 GenPept UniProtKB/Swiss-Prot:P0C6B1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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