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Yjefn3 YjeF N-terminal domain containing 3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 498608, updated on 5-Mar-2024

Summary

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Official Symbol
Yjefn3provided by RGD
Official Full Name
YjeF N-terminal domain containing 3provided by RGD
Primary source
RGD:1563236
See related
Ensembl:ENSRNOG00000039191 AllianceGenome:RGD:1563236
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1563236
Summary
Predicted to enable NADHX epimerase activity. Predicted to be active in mitochondrion. Orthologous to human YJEFN3 (YjeF N-terminal domain containing 3). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Brain (RPKM 17.3), Adrenal (RPKM 4.7) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
16p14
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (19567565..19573667)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (19533742..19539759)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (21282355..21288656)

Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene GATA zinc finger domain containing 2A Neighboring gene testis-specific serine kinase 6 Neighboring gene NADH:ubiquinone oxidoreductase subunit A13 Neighboring gene cartilage intermediate layer protein 2 Neighboring gene PBX homeobox 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables NADHX epimerase activity IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
yjeF N-terminal domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086034.1 Reference GRCr8

    Range
    19567565..19573667
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_573886.9 → XP_573886.5  yjeF N-terminal domain-containing protein 3 isoform X2

    UniProtKB/TrEMBL
    F1M695
    Related
    ENSRNOP00000061892.4
    Conserved Domains (1) summary
    PLN03049
    Location:15 → 248
    PLN03049; pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional

  2. XM_039094888.2 → XP_038950816.1  yjeF N-terminal domain-containing protein 3 isoform X1

    Conserved Domains (1) summary
    PLN03049
    Location:15 → 278
    PLN03049; pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional

  3. XM_063275930.1 → XP_063132000.1  yjeF N-terminal domain-containing protein 3 isoform X3

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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