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Ankrd29 ankyrin repeat domain 29 [ Rattus norvegicus (Norway rat) ]

Gene ID: 498823, updated on 3-Apr-2024

Summary

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Symbol
Ankrd29provided by RGD
Full Name
ankyrin repeat domain 29provided by RGD
Primary source
RGD:1587260
See related
Ensembl:ENSRNOG00000046744 AllianceGenome:RGD:1587260
Gene type
protein coding
RefSeq status
INFERRED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human ANKRD29 (ankyrin repeat domain 29). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Brain (RPKM 50.4), Lung (RPKM 37.6) and 4 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Ankrd29 in Genome Data Viewer
Location:
18p13
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 18 NC_086036.1 (3711052..3768997, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 18 NC_051353.1 (3436301..3494292, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 18 NC_005117.4 (3673915..3676187, complement)

Chromosome 18 - NC_086036.1Genomic Context describing neighboring genes Neighboring gene regulator of MON1-CCZ1 Neighboring gene NPC intracellular cholesterol transporter 1 Neighboring gene AKT interacting protein, pseudogene 1 Neighboring gene laminin subunit alpha 3 Neighboring gene uncharacterized LOC134482906 Neighboring gene uncharacterized LOC120098332

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
ankyrin repeat domain-containing protein 29
Names
ankyrin repeat domain-containing protein 29-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001190372.2 → NP_001177301.1  ankyrin repeat domain-containing protein 29

    Status: INFERRED

    Source sequence(s)
    JAXUCZ010000018
    UniProtKB/TrEMBL
    F1M3B1
    Conserved Domains (3) summary
    PLN03192
    Location:38 → 171
    PLN03192; Voltage-dependent potassium channel; Provisional
    sd00045
    Location:78 → 109
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:182 → 273
    Ank_2; Ankyrin repeats (3 copies)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086036.1 Reference GRCr8

    Range
    3711052..3768997 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039097019.2 → XP_038952947.1  ankyrin repeat domain-containing protein 29 isoform X1

    UniProtKB/TrEMBL
    A0A8I6A693, F1M3B1
    Related
    ENSRNOP00000087664.1
    Conserved Domains (4) summary
    sd00045
    Location:81 → 112
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:150 → 201
    Ank_4; Ankyrin repeats (many copies)
    pfam12796
    Location:53 → 144
    Ank_2; Ankyrin repeats (3 copies)
    cl39094
    Location:14 → 78
    Ank_2; Ankyrin repeats (3 copies)

  2. XM_039097021.2 → XP_038952949.1  ankyrin repeat domain-containing protein 29 isoform X2

    UniProtKB/TrEMBL
    F1M3B1, M0RAA5
    Related
    ENSRNOP00000066450.2
    Conserved Domains (3) summary
    sd00045
    Location:41 → 72
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:110 → 161
    Ank_4; Ankyrin repeats (many copies)
    pfam12796
    Location:13 → 104
    Ank_2; Ankyrin repeats (3 copies)

  3. XM_039097024.2 → XP_038952952.1  ankyrin repeat domain-containing protein 29 isoform X4

    Conserved Domains (2) summary
    sd00045
    Location:53 → 84
    ANK; ANK repeat [structural motif]
    cl39094
    Location:3 → 168
    Ank_2; Ankyrin repeats (3 copies)

  4. XM_039097025.2 → XP_038952953.1  ankyrin repeat domain-containing protein 29 isoform X4

    Conserved Domains (2) summary
    sd00045
    Location:53 → 84
    ANK; ANK repeat [structural motif]
    cl39094
    Location:3 → 168
    Ank_2; Ankyrin repeats (3 copies)

  5. XM_063277513.1 → XP_063133583.1  ankyrin repeat domain-containing protein 29 isoform X4

  6. XM_039097022.2 → XP_038952950.1  ankyrin repeat domain-containing protein 29 isoform X3

    Conserved Domains (2) summary
    sd00045
    Location:21 → 52
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:92 → 183
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein Strain
Heading Accession and Version

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