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Ptprcap protein tyrosine phosphatase, receptor type, C-associated protein [ Rattus norvegicus (Norway rat) ]

Gene ID: 499300, updated on 5-Mar-2024

Summary

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Official Symbol
Ptprcapprovided by RGD
Official Full Name
protein tyrosine phosphatase, receptor type, C-associated proteinprovided by RGD
Primary source
RGD:1559601
See related
Ensembl:ENSRNOG00000021724 AllianceGenome:RGD:1559601
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human PTPRCAP (protein tyrosine phosphatase receptor type C associated protein). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Thymus (RPKM 1424.1), Spleen (RPKM 764.6) and 1 other tissue See more
Orthologs
human mouse all
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Genomic context

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See Ptprcap in Genome Data Viewer
Location:
1q43
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (210878593..210880752)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (201449133..201451293)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (219403970..219406129)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene calcium binding protein 4 Neighboring gene ribosomal protein L35A, pseudogene 6 Neighboring gene coronin 1B Neighboring gene ribosomal protein S6 kinase B2 Neighboring gene carnosine synthase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. The transmembrane adaptor protein TRIM regulates T cell receptor (TCR) expression and TCR-mediated signaling via an association with the TCR zeta chain. Kirchgessner H, et al. J Exp Med, 2001 Jun 4. PMID 11390434, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
protein tyrosine phosphatase receptor type C-associated protein
Names
protein tyrosine phosphatase, receptor type, C polypeptide-associated protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024289.1 → NP_001019460.1  protein tyrosine phosphatase receptor type C-associated protein precursor

    See identical proteins and their annotated locations for NP_001019460.1

    Status: PROVISIONAL

    Source sequence(s)
    BC088279
    UniProtKB/TrEMBL
    F7FP40, Q5I0I6
    Related
    ENSRNOP00000038539.3, ENSRNOT00000029607.4
    Conserved Domains (1) summary
    pfam15713
    Location:58 → 197
    PTPRCAP; Protein tyrosine phosphatase receptor type C-associated

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    210878593..210880752
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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