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Fam151b family with sequence similarity 151, member B [ Rattus norvegicus (Norway rat) ]

Gene ID: 499507, updated on 3-Apr-2024

Summary

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Official Symbol
Fam151bprovided by RGD
Official Full Name
family with sequence similarity 151, member Bprovided by RGD
Primary source
RGD:1561110
See related
Ensembl:ENSRNOG00000024136 AllianceGenome:RGD:1561110
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1561110
Summary
Predicted to be active in extracellular space. Orthologous to human FAM151B (family with sequence similarity 151 member B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Adrenal (RPKM 46.8), Brain (RPKM 36.8) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
2q12
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (25409382..25446225, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (23674317..23710420, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (22023038..22059166, complement)

Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene dihydrofolate reductase Neighboring gene ankyrin repeat domain 34B Neighboring gene zinc finger FYVE-type containing 16 Neighboring gene spermatogenic leucine zipper 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in photoreceptor cell development ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
protein FAM151B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001134748.1 → NP_001128220.1  protein FAM151B

    See identical proteins and their annotated locations for NP_001128220.1

    Status: PROVISIONAL

    Source sequence(s)
    BC167070
    UniProtKB/TrEMBL
    A0A8I6AFQ9, A6I4R1, B2RZ92, F7EMX6
    Related
    ENSRNOP00000032254.4, ENSRNOT00000031909.6
    Conserved Domains (1) summary
    pfam10223
    Location:29 → 263
    DUF2181; Uncharacterized conserved protein (DUF2181)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086020.1 Reference GRCr8

    Range
    25409382..25446225 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063282342.1 → XP_063138412.1  protein FAM151B isoform X7

  2. XM_063282336.1 → XP_063138406.1  protein FAM151B isoform X2

    UniProtKB/TrEMBL
    A6I4R0

  3. XM_063282337.1 → XP_063138407.1  protein FAM151B isoform X3

  4. XM_063282340.1 → XP_063138410.1  protein FAM151B isoform X6

  5. XM_063282338.1 → XP_063138408.1  protein FAM151B isoform X4

  6. XM_063282339.1 → XP_063138409.1  protein FAM151B isoform X5

  7. XM_039102823.2 → XP_038958751.1  protein FAM151B isoform X1

    UniProtKB/TrEMBL
    A0A8I6AFQ9
    Conserved Domains (1) summary
    pfam10223
    Location:11 → 245
    DUF2181; Uncharacterized conserved protein (DUF2181)
Nucleotide Protein Strain
Heading Accession and Version

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