U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Galntl5 polypeptide N-acetylgalactosaminyltransferase-like 5 [ Rattus norvegicus (Norway rat) ]

Gene ID: 499968, updated on 9-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
Galntl5provided by RGD
Official Full Name
polypeptide N-acetylgalactosaminyltransferase-like 5provided by RGD
Primary source
RGD:1565271
See related
Ensembl:ENSRNOG00000040301 AllianceGenome:RGD:1565271
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Galnt15
Summary
Predicted to be involved in spermatid development. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human GALNTL5 (polypeptide N-acetylgalactosaminyltransferase like 5). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward (RPKM 753.8) See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Galntl5 in Genome Data Viewer
Location:
4q11
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (10607260..10657181, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (9873426..9923297, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (6333049..6450137, complement)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene lysine methyltransferase 2C Neighboring gene microtubule-associated protein 1 light chain 3 beta, pseudogene 2 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 11 Neighboring gene ribosomal protein L30, pseudogene 8 Neighboring gene calcineurin B homologous protein 1-like Neighboring gene hypothetical LOC100359776

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A heterozygous mutation of GALNTL5 affects male infertility with impairment of sperm motility. Takasaki N, et al. Proc Natl Acad Sci U S A, 2014 Jan 21. PMID 24398516, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
NOT enables glycosyltransferase activity ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
NOT involved_in protein glycosylation ISO
Inferred from Sequence Orthology
more info
  
involved_in spermatid development IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in spermatid development ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5
Names
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5
NP_001020319.1
XP_006236020.1
XP_038963988.1
XP_038963989.1
XP_038963990.1
XP_038963992.1
XP_038963993.1
XP_063142531.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001025148.1 → NP_001020319.1  inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5

    See identical proteins and their annotated locations for NP_001020319.1

    Status: PROVISIONAL

    Source sequence(s)
    BC078995
    UniProtKB/TrEMBL
    D3ZL42, Q6AYL7
    Related
    ENSRNOP00000058731.3, ENSRNOT00000062026.5
    Conserved Domains (2) summary
    cd02510
    Location:123 → 419
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam13641
    Location:123 → 355
    Glyco_tranf_2_3; Glycosyltransferase like family 2

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    10607260..10657181 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039108062.2 → XP_038963990.1  inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5 isoform X3

    Conserved Domains (1) summary
    cd02510
    Location:27 → 323
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

  2. XM_006235958.5 → XP_006236020.1  inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5 isoform X1

    Conserved Domains (1) summary
    cd02510
    Location:51 → 347
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

  3. XM_039108061.2 → XP_038963989.1  inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5 isoform X3

    Conserved Domains (1) summary
    cd02510
    Location:27 → 323
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

  4. XM_039108065.2 → XP_038963993.1  inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5 isoform X6

    UniProtKB/TrEMBL
    A6KJI3
    Conserved Domains (1) summary
    cd02510
    Location:2 → 276
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

  5. XM_063286461.1 → XP_063142531.1  inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5 isoform X5

  6. XM_039108060.2 → XP_038963988.1  inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5 isoform X2

    Conserved Domains (1) summary
    cl11394
    Location:123 → 328
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  7. XM_039108064.2 → XP_038963992.1  inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5 isoform X4

    Conserved Domains (1) summary
    cl11394
    Location:123 → 289
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools
Miscellaneous