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Ccser1 coiled-coil serine-rich protein 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 500153, updated on 5-Mar-2024

Summary

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Official Symbol
Ccser1provided by RGD
Official Full Name
coiled-coil serine-rich protein 1provided by RGD
Primary source
RGD:1565731
See related
Ensembl:ENSRNOG00000029321 AllianceGenome:RGD:1565731
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Fam190a; RGD1565731
Summary
Orthologous to human CCSER1 (coiled-coil serine rich protein 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Brain (RPKM 114.6), Kidney (RPKM 82.6) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
4q24-q31
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (91483896..92720439)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (90153873..91391441)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (91235885..92516800)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 6, catalytic subunit, pseuidogene 1 Neighboring gene U2 spliceosomal RNA Neighboring gene uncharacterized LOC120102492 Neighboring gene high mobility group protein B1-like Neighboring gene developmental pluripotency-associated protein 2-like Neighboring gene U7 small nuclear RNA Neighboring gene phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase, pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
serine-rich coiled-coil domain-containing protein 1
Names
family with sequence similarity 190, member A
protein FAM190A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001134622.1 → NP_001128094.1  serine-rich coiled-coil domain-containing protein 1

    See identical proteins and their annotated locations for NP_001128094.1

    Status: PROVISIONAL

    Source sequence(s)
    CH474042
    UniProtKB/TrEMBL
    A6KF12

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    91483896..92720439
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039108140.2 → XP_038964068.1  serine-rich coiled-coil domain-containing protein 1 isoform X3

  2. XM_017592802.3 → XP_017448291.1  serine-rich coiled-coil domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    D3ZTW6

  3. XM_017592805.3 → XP_017448294.1  serine-rich coiled-coil domain-containing protein 1 isoform X2

  4. XM_017592806.3 → XP_017448295.1  serine-rich coiled-coil domain-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    D3ZTW6

  5. XM_017592808.3 → XP_017448297.1  serine-rich coiled-coil domain-containing protein 1 isoform X5

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Chemical Information
Molecular Biology Databases
Research Materials
Miscellaneous