U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Msantd4 Myb/SANT DNA binding domain containing 4 with coiled-coils [ Rattus norvegicus (Norway rat) ]

Gene ID: 500941, updated on 3-Apr-2024

Summary

Official Symbol
Msantd4provided by RGD
Official Full Name
Myb/SANT DNA binding domain containing 4 with coiled-coilsprovided by RGD
Primary source
RGD:1565380
See related
Ensembl:ENSRNOG00000022245 AllianceGenome:RGD:1565380
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be located in nucleus. Orthologous to human MSANTD4 (Myb/SANT DNA binding domain containing 4 with coiled-coils). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Heart (RPKM 194.9), Brain (RPKM 171.2) and 9 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Msantd4 in Genome Data Viewer
Location:
8q11
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (9801921..9812529)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (1516979..1527587)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (1503018..1513626)

Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene kelch repeat and BTB domain containing 3 Neighboring gene zinc finger protein 431 like, pseudogene 4 Neighboring gene glutamate ionotropic receptor AMPA type subunit 4 Neighboring gene uncharacterized LOC120094073 Neighboring gene uncharacterized LOC134480139

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
myb/SANT-like DNA-binding domain-containing protein 4
Names
Myb/SANT-like DNA-binding domain containing 4 with coiled-coils

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024357.1NP_001019528.1  myb/SANT-like DNA-binding domain-containing protein 4

    See identical proteins and their annotated locations for NP_001019528.1

    Status: PROVISIONAL

    Source sequence(s)
    BC096000
    UniProtKB/Swiss-Prot
    Q501L3
    UniProtKB/TrEMBL
    A6KQJ5
    Related
    ENSRNOP00000030251.3, ENSRNOT00000034482.5
    Conserved Domains (2) summary
    PTZ00266
    Location:223313
    PTZ00266; NIMA-related protein kinase; Provisional
    pfam13873
    Location:886
    Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086026.1 Reference GRCr8

    Range
    9801921..9812529
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063265957.1XP_063122027.1  myb/SANT-like DNA-binding domain-containing protein 4 isoform X1

    UniProtKB/Swiss-Prot
    Q501L3
    UniProtKB/TrEMBL
    A6KQJ5