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Tdpoz2l1 TD and POZ domain containing 2 like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 502576, updated on 2-May-2024

Summary

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Official Symbol
Tdpoz2l1provided by RGD
Official Full Name
TD and POZ domain containing 2 like 1provided by RGD
Primary source
RGD:1560554
See related
Ensembl:ENSRNOG00000062928 AllianceGenome:RGD:1560554
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RTDPOZ-T1; RGD1560554
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Genomic context

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See Tdpoz2l1 in Genome Data Viewer
Location:
2q34
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (182285232..182286374, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (179601807..179602949, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (195485668..195553986, complement)

Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene TD and POZ domain containing 2 like 4 Neighboring gene TD and POZ domain containing 1, pseudogene 3 Neighboring gene TD and POZ domain containing like 1 Neighboring gene nucleolar pre-rRNA processing protein NIP7, pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcription of the rat testis-specific Rtdpoz-T1 and -T2 retrogenes during embryo development: co-transcription and frequent exonisation of transposable element sequences. Huang CJ, et al. BMC Mol Biol, 2009 Jul 25. PMID 19630990, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in protein catabolic process IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
similar to TDPOZ2
Names
TD and POZ domain-containing protein 2
TD and POZ domain-containing protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402580.1 → NP_001389509.1  similar to TDPOZ2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000002
    Related
    ENSRNOP00000091383.1, ENSRNOT00000109844.1

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086020.1 Reference GRCr8

    Range
    182285232..182286374 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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