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PGK1P2 phosphoglycerate kinase 1, pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 5233, updated on 10-Oct-2023

Summary

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Official Symbol
PGK1P2provided by HGNC
Official Full Name
phosphoglycerate kinase 1, pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:8899
See related
Ensembl:ENSG00000213290 AllianceGenome:HGNC:8899
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PGK2
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Genomic context

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Location:
19p13.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (12559485..12561278)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (12687895..12689688)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (12670299..12672092)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene zinc finger protein 564 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:12660933-12661435 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10152 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14057 Neighboring gene Sharpr-MPRA regulatory region 88 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:12663347-12663848 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:12663849-12664348 Neighboring gene long intergenic non-protein coding RNA 2926 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr19:12690738-12691937 Neighboring gene zinc finger protein 490 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14058 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10153 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14059 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14060 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:12724145-12724645 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10154 Neighboring gene vomeronasal 2 receptor 16 pseudogene Neighboring gene zinc finger protein 791 Neighboring gene uncharacterized LOC105372279

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Toward early diagnosis of myotonic dystrophy: construction and characterization of a somatic cell hybrid with a single human der(19) chromosome. Hulsebos T, et al. Cytogenet Cell Genet, 1986. PMID 3502690
  2. Mapping of human autosomal phosphoglycerate kinase sequence to chromosome 19. Gartler SM, et al. Somat Cell Mol Genet, 1986 Jul. PMID 3016919
  3. Regional localization of the phosphoglycerate kinase gene and pseudogene on the human X chromosome and assignment of a related DNA sequence to chromosome 19. Willard HF, et al. Hum Genet, 1985. PMID 2995234

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • phosphoglycerate kinase-2 (testicular PGK)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_001528.4 

    Range
    101..1894
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    12559485..12561278
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    12687895..12689688
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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