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PVX_003920 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, putative [ Plasmodium vivax (malaria parasite P. vivax) ]

Gene ID: 5472275, updated on 16-Nov-2023

Summary

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Gene symbol
PVX_003920
Gene description
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, putative
Locus tag
PVX_003920
Gene type
protein coding
RNA name
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, putative
RefSeq status
PROVISIONAL
Organism
Plasmodium vivax (strain: Salvador I)
Lineage
Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Plasmodium)
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Genomic context

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Location:
chromosome: 4
Exon count:
2
Sequence:
Chromosome: 4; NC_009909.1 (492876..493864, complement)

Chromosome 4 - NC_009909.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene phospholipase A2, putative

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009909.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative genomics of the neglected human malaria parasite Plasmodium vivax. Carlton JM, et al. Nature, 2008 Oct 9. PMID 18843361, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Repeated regions

  • Loc: c493040-493001 rpt_type = tandem , rpt_unit_seq = t , satellite = microsatellite
  • Loc: c493178-493147 rpt_type = tandem , rpt_unit_seq = taa , satellite = microsatellite
  • Loc: c493217-493177 rpt_type = tandem , rpt_unit_seq = a , satellite = microsatellite

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in terpenoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, putative
XP_001613023.1
  • encoded by transcript PVX_003920A; Apicoplast targeted protein. Curated by Stuart Ralph, Walter and Eliza Hall Institute of Medical Research, Australia.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009909.1 Reference assembly

    Range
    492876..493864 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001612973.1 → XP_001613023.1  2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, putative [Plasmodium vivax]

    See identical proteins and their annotated locations for XP_001613023.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0J9T078, A0A0J9TIF1, A0A1G4GST3, A0A1G4H879, A5KBP6
    Conserved Domains (1) summary
    cd00554
    Location:106 → 282
    MECDP_synthase; MECDP_synthase (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase), encoded by the ispF gene, catalyzes the formation of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid biosynthesis. ...
Nucleotide Protein
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