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PVX_082790 1-deoxy-D-xylulose 5-phosphate synthase, putative [ Plasmodium vivax (malaria parasite P. vivax) ]

Gene ID: 5473443, updated on 17-May-2024

Summary

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Gene symbol
PVX_082790
Gene description
1-deoxy-D-xylulose 5-phosphate synthase, putative
Primary source
PlasmoDB:PVX_082790
Locus tag
PVX_082790
Gene type
protein coding
RNA name
1-deoxy-D-xylulose 5-phosphate synthase, putative
RefSeq status
PROVISIONAL
Organism
Plasmodium vivax (strain: Salvador I)
Lineage
Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Plasmodium)
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Genomic context

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Location:
chromosome: 12
Exon count:
1
Sequence:
Chromosome: 12; NC_009917.1 (693715..697050, complement)

Chromosome 12 - NC_009917.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene exonuclease, putative Neighboring gene CDK-related protein kinase 6, putative Neighboring gene mitochondrial intermediate peptidase, putative

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009917.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mechanistic binding insights for 1-deoxy-D-Xylulose-5-Phosphate synthase, the enzyme catalyzing the first reaction of isoprenoid biosynthesis in the malaria-causing protists, Plasmodium falciparum and Plasmodium vivax. Battistini MR, et al. Protein Expr Purif, 2016 Apr. PMID 26699947, Free PMC Article
  2. Comparative genomics of the neglected human malaria parasite Plasmodium vivax. Carlton JM, et al. Nature, 2008 Oct 9. PMID 18843361, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Enzyme adheres to a random sequential mechanism with respect to binding of both substrates: pyruvate and D-glyceraldehyde-3-phosphate.
    Title: Mechanistic binding insights for 1-deoxy-D-Xylulose-5-Phosphate synthase, the enzyme catalyzing the first reaction of isoprenoid biosynthesis in the malaria-causing protists, Plasmodium falciparum and Plasmodium vivax.
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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-deoxy-D-xylulose-5-phosphate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in terpenoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1-deoxy-D-xylulose 5-phosphate synthase, putative
XP_001614158.1
  • encoded by transcript PVX_082790A; Apicoplast targeted protein. Curated by Stuart Ralph, Walter and Eliza Hall Institute of Medical Research, Australia.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009917.1 Reference assembly

    Range
    693715..697050 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001614108.1 → XP_001614158.1  1-deoxy-D-xylulose 5-phosphate synthase, putative [Plasmodium vivax]

    See identical proteins and their annotated locations for XP_001614158.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0J9SR85, A0A0J9T8K7, A0A0J9TQQ5, A0A1G4HGI7, A0A565A087, A5K817
    Conserved Domains (1) summary
    PRK05444
    Location:358 → 1105
    PRK05444; 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Nucleotide Protein
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