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clasrp CLK4-associating serine/arginine rich protein [ Danio rerio (zebrafish) ]

Gene ID: 555304, updated on 27-Mar-2024

Summary

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Official Symbol
clasrpprovided by ZNC
Official Full Name
CLK4-associating serine/arginine rich proteinprovided by ZNC
Primary source
ZFIN:ZDB-GENE-060503-837
See related
Ensembl:ENSDARG00000061742 AllianceGenome:ZFIN:ZDB-GENE-060503-837
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:153344; si:dkey-7l12.4
Summary
Orthologous to human CLASRP (CLK4 associating serine/arginine rich protein). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 18
Exon count:
21
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (36601450..36631296)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (36620455..36650286)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110438122 Neighboring gene sialic acid acetylesterase Neighboring gene zinc finger protein 296 Neighboring gene calpain 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Processing of fish Ig heavy chain transcripts: diverse splicing patterns and unusual nonsense mediated decay. Quiniou SM, et al. Dev Comp Immunol, 2011 Sep. PMID 21168434
  2. Phylogenetic and Expression Analysis of Fos Transcription Factors in Zebrafish. Kubra K, et al. Int J Mol Sci, 2022 Sep 3. PMID 36077499, Free PMC Article
  3. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
CLK4-associating serine/arginine rich protein
Names
sfrs16

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044329.1 → NP_001037794.1  CLK4-associating serine/arginine rich protein

    Status: PROVISIONAL

    Source sequence(s)
    BX927074
    UniProtKB/TrEMBL
    A0A8M1N962, E7EYB4, Q1LUX7
    Related
    ENSDARP00000111822.2, ENSDART00000127825.4
    Conserved Domains (1) summary
    pfam09750
    Location:41 → 170
    DRY_EERY; Alternative splicing regulator

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    36601450..36631296
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017351925.2 → XP_017207414.1  CLK4-associating serine/arginine rich protein isoform X1

    UniProtKB/TrEMBL
    A0A8M6YVY5

  2. XM_005173653.4 → XP_005173710.1  CLK4-associating serine/arginine rich protein isoform X2

    UniProtKB/TrEMBL
    A0A8M2BKX5
    Conserved Domains (2) summary
    pfam05398
    Location:347 → 401
    PufQ; PufQ cytochrome subunit
    pfam09750
    Location:41 → 170
    DRY_EERY; Alternative splicing regulator

RNA

  1. XR_225163.4 RNA Sequence

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395039.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    101508..135987
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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