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tnip2 TNFAIP3 interacting protein 2 [ Danio rerio (zebrafish) ]

Gene ID: 564279, updated on 27-Mar-2024

Summary

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Official Symbol
tnip2provided by ZNC
Official Full Name
TNFAIP3 interacting protein 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-120913-2
See related
Ensembl:ENSDARG00000074501 AllianceGenome:ZFIN:ZDB-GENE-120913-2
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable K63-linked polyubiquitin modification-dependent protein binding activity and metal ion binding activity. Predicted to be located in cytoplasm. Orthologous to human TNIP2 (TNFAIP3 interacting protein 2). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (37372189..37377841, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (36674523..36680176, complement)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene doublecortin-like kinase 2a Neighboring gene family with sequence similarity 193 member A Neighboring gene secretory calcium-binding phosphoprotein 1 Neighboring gene SPARC-like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. The seahorse genome and the evolution of its specialized morphology. Lin Q, et al. Nature, 2016 Dec 14. PMID 27974754, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables K63-linked polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
TNFAIP3-interacting protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    37372189..37377841 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_687625.8 → XP_692717.4  TNFAIP3-interacting protein 2

    UniProtKB/TrEMBL
    A0A8N7TE24, F1QDJ2
    Related
    ENSDARP00000102784.3, ENSDART00000113542.4
    Conserved Domains (3) summary
    pfam12180
    Location:230 → 263
    EABR; TSG101 and ALIX binding domain of CEP55
    cl00847
    Location:64 → 138
    PAC2; PAC2 family
    cl15254
    Location:309 → 365
    UBAN; polyubiquitin binding domain of NEMO and related proteins
Nucleotide Protein Strain
Heading Accession and Version

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