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Zfp24 zinc finger protein 24 [ Mus musculus (house mouse) ]

Gene ID: 59057, updated on 9-May-2024

Summary

Official Symbol
Zfp24provided by MGI
Official Full Name
zinc finger protein 24provided by MGI
Primary source
MGI:MGI:1929704
See related
Ensembl:ENSMUSG00000051469 AllianceGenome:MGI:1929704
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
KOX17; ZF-12; Znf24; Zfp191; 3526401F17Rik; 5033419P20Rik
Summary
Enables sequence-specific DNA binding activity. Involved in myelination. Located in nucleus. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; limb primordium; and sensory organ. Orthologous to human ZNF24 (zinc finger protein 24). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 5.8), CNS E14 (RPKM 4.0) and 27 other tissues See more
Orthologs
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Genomic context

Location:
18 A2; 18 12.55 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (24142774..24155294, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (24009717..24020813, complement)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene zinc finger and SCAN domain containing 30 Neighboring gene zinc finger protein 397 Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:24145637-24145876 Neighboring gene STARR-seq mESC enhancer starr_44051 Neighboring gene zinc finger protein 35 Neighboring gene STARR-positive B cell enhancer ABC_E8705 Neighboring gene STARR-seq mESC enhancer starr_44054 Neighboring gene ribosomal protein S8 pseudogene Neighboring gene STARR-seq mESC enhancer starr_44055 Neighboring gene predicted gene, 18085

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables DNA-binding transcription activator activity, RNA polymerase II-specific ISO
Inferred from Sequence Orthology
more info
 
enables DNA-binding transcription factor activity TAS
Traceable Author Statement
more info
PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in myelination IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in negative regulation of DNA-templated transcription ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
zinc finger protein 24
Names
hypomyelinated CNS protein
zfp-191
zinc finger protein 191
zinc finger protein ZF-12

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001357447.1NP_001344376.1  zinc finger protein 24

    Status: VALIDATED

    Source sequence(s)
    AC126807, BP764437
    Consensus CDS
    CCDS29098.1
    UniProtKB/Swiss-Prot
    Q5MDG8, Q91VN1, Q9WUQ0
    Conserved Domains (3) summary
    smart00431
    Location:48159
    SCAN; leucine rich region
    COG5048
    Location:305358
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:253273
    ZF_C2H2; C2H2 Zn finger [structural motif]
  2. NM_001357448.1NP_001344377.1  zinc finger protein 24

    Status: VALIDATED

    Source sequence(s)
    AC126807, BP764437
    Consensus CDS
    CCDS29098.1
    UniProtKB/Swiss-Prot
    Q5MDG8, Q91VN1, Q9WUQ0
    Related
    ENSMUSP00000122579.2, ENSMUST00000153337.2
    Conserved Domains (3) summary
    smart00431
    Location:48159
    SCAN; leucine rich region
    COG5048
    Location:305358
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:253273
    ZF_C2H2; C2H2 Zn finger [structural motif]
  3. NM_021559.3NP_067534.2  zinc finger protein 24

    See identical proteins and their annotated locations for NP_067534.2

    Status: VALIDATED

    Source sequence(s)
    AC126807, BC054832, BP764437, CD562306
    Consensus CDS
    CCDS29098.1
    UniProtKB/Swiss-Prot
    Q5MDG8, Q91VN1, Q9WUQ0
    Related
    ENSMUSP00000064637.6, ENSMUST00000066497.12
    Conserved Domains (3) summary
    smart00431
    Location:48159
    SCAN; leucine rich region
    COG5048
    Location:305358
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:253273
    ZF_C2H2; C2H2 Zn finger [structural motif]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    24142774..24155294 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036161225.1XP_036017118.1  zinc finger protein 24 isoform X1

    UniProtKB/Swiss-Prot
    Q5MDG8, Q91VN1, Q9WUQ0
    Conserved Domains (3) summary
    smart00431
    Location:48159
    SCAN; leucine rich region
    COG5048
    Location:305358
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:253273
    ZF_C2H2; C2H2 Zn finger [structural motif]
  2. XM_036161226.1XP_036017119.1  zinc finger protein 24 isoform X1

    UniProtKB/Swiss-Prot
    Q5MDG8, Q91VN1, Q9WUQ0
    Conserved Domains (3) summary
    smart00431
    Location:48159
    SCAN; leucine rich region
    COG5048
    Location:305358
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:253273
    ZF_C2H2; C2H2 Zn finger [structural motif]