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Pramel40 PRAME like 40 [ Mus musculus (house mouse) ]

Gene ID: 624421, updated on 11-Apr-2024

Summary

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Official Symbol
Pramel40provided by MGI
Official Full Name
PRAME like 40provided by MGI
Primary source
MGI:MGI:3779601
See related
Ensembl:ENSMUSG00000095718 AllianceGenome:MGI:3779601
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm6502
Summary
Predicted to enable ubiquitin ligase-substrate adaptor activity. Predicted to be part of Cul2-RING ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to several human genes including PRAMEF1 (PRAME family member 1); PRAMEF10 (PRAME family member 10); and PRAMEF11 (PRAME family member 11). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Pramel40 in Genome Data Viewer
Location:
5 E3; 5 47.29 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (94445852..94465061)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (94297993..94317202)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene PRAME like 53 Neighboring gene PRAME like 37 Neighboring gene PRAME like 38 Neighboring gene PRAME like 39, pseudogene Neighboring gene PRAME like 52, pseudogene Neighboring gene STARR-seq mESC enhancer starr_13671 Neighboring gene PRAME like 41 Neighboring gene cDNA sequence BC080696

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
enables ubiquitin-like ligase-substrate adaptor activity ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
part_of Cul2-RING ubiquitin ligase complex ISO
Inferred from Sequence Orthology
more info
  
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
PRAME family member 8-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    94445852..94465061
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011249642.2 → XP_011247944.2  PRAME family member 8-like

    UniProtKB/TrEMBL
    A0A0J9YUV1, L7N456
    Related
    ENSMUSP00000083215.3, ENSMUST00000086050.4
Nucleotide Protein Strain
Heading Accession and Version

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