U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Bend4 BEN domain containing 4 [ Mus musculus (house mouse) ]

Gene ID: 666938, updated on 5-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
Bend4provided by MGI
Official Full Name
BEN domain containing 4provided by MGI
Primary source
MGI:MGI:3648414
See related
Ensembl:ENSMUSG00000092060 AllianceGenome:MGI:3648414
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG666938; D330027G24Rik
Summary
Orthologous to human BEND4 (BEN domain containing 4). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in placenta adult (RPKM 6.3), testis adult (RPKM 2.9) and 15 other tissues See more
Orthologs
human all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Bend4 in Genome Data Viewer
Location:
5 C3.1; 5 36.06 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (67549490..67585471, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (67392147..67428128, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E3579 Neighboring gene STARR-seq mESC enhancer starr_13313 Neighboring gene transmembrane protein 33 Neighboring gene CRISPRi-validated cis-regulatory element for Bend4 and Slc30a9 Neighboring gene solute carrier family 30 (zinc transporter), member 9 Neighboring gene STARR-seq mESC enhancer starr_13315 Neighboring gene STARR-seq mESC enhancer starr_13316 Neighboring gene predicted gene, 33345 Neighboring gene predicted gene 42632 Neighboring gene RIKEN cDNA C330024D21 gene Neighboring gene CRISPRi-validated cis-regulatory element for Bend4 and Bendr Neighboring gene predicted gene, 40315 Neighboring gene 60S ribosomal protein L37 pseudogene

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Lineage-specific biology revealed by a finished genome assembly of the mouse. Church DM, et al. PLoS Biol, 2009 May 5. PMID 19468303, Free PMC Article
  2. ACAA2 is a ligand-dependent coactivator for thyroid hormone receptor β1. Wang W, et al. Biochem Biophys Res Commun, 2021 Oct 22. PMID 34474245, Free PMC Article
  3. A germline-specific class of small RNAs binds mammalian Piwi proteins. Girard A, et al. Nature, 2006 Jul 13. PMID 16751776
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

Go to the top of the page Help
Preferred Names
BEN domain-containing protein 4

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001164806.1 → NP_001158278.1  BEN domain-containing protein 4

    See identical proteins and their annotated locations for NP_001158278.1

    Status: VALIDATED

    Source sequence(s)
    AC122562
    Consensus CDS
    CCDS51512.1
    UniProtKB/Swiss-Prot
    P86174
    Related
    ENSMUSP00000132684.2, ENSMUST00000169190.5
    Conserved Domains (2) summary
    smart00338
    Location:334 → 371
    BRLZ; basic region leucin zipper
    smart01025
    Location:420 → 498
    BEN; The BEN domain is found in diverse animal proteins

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    67549490..67585471 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006504059.4 → XP_006504122.1  BEN domain-containing protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A0J9YV05
    Conserved Domains (1) summary
    cl21462
    Location:334 → 371
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  2. XM_030254766.1 → XP_030110626.1  BEN domain-containing protein 4 isoform X1

    UniProtKB/Swiss-Prot
    P86174
    Related
    ENSMUSP00000144639.2, ENSMUST00000201972.2
    Conserved Domains (2) summary
    smart00338
    Location:334 → 371
    BRLZ; basic region leucin zipper
    smart01025
    Location:420 → 498
    BEN; The BEN domain is found in diverse animal proteins
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P86174.2 GenPept UniProtKB/Swiss-Prot:P86174

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools
Miscellaneous