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Fundc2 FUN14 domain containing 2 [ Mus musculus (house mouse) ]

Gene ID: 67391, updated on 12-May-2024

Summary

Official Symbol
Fundc2provided by MGI
Official Full Name
FUN14 domain containing 2provided by MGI
Primary source
MGI:MGI:1914641
See related
Ensembl:ENSMUSG00000031198 AllianceGenome:MGI:1914641
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
DC44; HCBP6; 4833415N24Rik
Summary
Predicted to be involved in autophagy of mitochondrion. Predicted to be located in mitochondrion. Predicted to be integral component of mitochondrial outer membrane. Orthologous to human FUNDC2 (FUN14 domain containing 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in bladder adult (RPKM 12.2), heart adult (RPKM 11.9) and 22 other tissues See more
Orthologs
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Genomic context

See Fundc2 in Genome Data Viewer
Location:
X A7.3; X 38.22 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (74426005..74440764)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (75382399..75397158)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene coagulation factor VIII Neighboring gene protein phosphatase 4, regulatory subunit 2 pseudogene Neighboring gene predicted gene 8522 Neighboring gene STARR-seq mESC enhancer starr_47381 Neighboring gene STARR-seq mESC enhancer starr_47382 Neighboring gene STARR-positive B cell enhancer ABC_E11683 Neighboring gene C-X9-C motif containing 4 Neighboring gene mature T cell proliferation 1 Neighboring gene BRCA1/BRCA2-containing complex, subunit 3

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 
  • Targeted (1)  1 citation

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables phosphatidylinositol-3,4,5-trisphosphate binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in autophagy of mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in intracellular triglyceride homeostasis ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of platelet activation IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in mitochondrial outer membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
FUN14 domain-containing protein 2
Names
hepatitis C virus core-binding protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026126.4NP_080402.3  FUN14 domain-containing protein 2

    See identical proteins and their annotated locations for NP_080402.3

    Status: VALIDATED

    Source sequence(s)
    AL731844, BC061464, BY124891
    Consensus CDS
    CCDS30239.1
    UniProtKB/Swiss-Prot
    Q80VT2, Q80YD9, Q8BSM8, Q9D617, Q9D6K8
    Related
    ENSMUSP00000033541.5, ENSMUST00000033541.5
    Conserved Domains (1) summary
    pfam04930
    Location:49135
    FUN14; FUN14 family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    74426005..74440764
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)