Tafa2 TAFA chemokine like family member 2 [Rattus norvegicus (Norway rat)] - Gene

Summary

Symbol: Tafa2provided by RGD
Full Name: TAFA chemokine like family member 2provided by RGD
Primary source: RGD:1589429
See related: Ensembl:ENSRNOG00000064852 AllianceGenome:RGD:1589429
Gene type: protein coding
RefSeq status: MODEL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Fam19a2
Summary: Predicted to enable receptor ligand activity. Predicted to be involved in memory and visual learning. Predicted to be located in cytoplasm and nucleus. Predicted to be active in extracellular space. Orthologous to human TAFA2 (TAFA chemokine like family member 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Restricted expression toward (RPKM 41.4) See more
Orthologs: human mouse all
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Genomic context

Location:: 7q22

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	7	NC_086025.1 (60827985..61303873)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	7	NC_051342.1 (58942598..59418640)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	7	NC_005106.4 (66017066..66496690, complement)

Chromosome 7 - NC_086025.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

D7Rat166 (e-PCR), detects polymorphism
- UniSTS:228117

D7Rat57 (e-PCR), detects polymorphism
- UniSTS:228185

D4Mit353 (e-PCR), detects polymorphism
- UniSTS:130147

AI501937 (e-PCR)
- UniSTS:239858

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables receptor ligand activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info
involved_in memory	ISO Inferred from Sequence Orthology more info
involved_in signal transduction	IEA Inferred from Electronic Annotation more info
involved_in visual learning	ISO Inferred from Sequence Orthology more info

Component	Evidence Code	Pubs
located_in cytoplasm	ISO Inferred from Sequence Orthology more info
is_active_in extracellular space	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: TAFA chemokine like family member 2; chemokine-like protein TAFA-2

Names: family with sequence similarity 19 (chemokine (C-C motif)-like), member A2; family with sequence similarity 19 member A2, C-C motif chemokine like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086025.1 Reference GRCr8

Range

60827985..61303873

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_063264598.1 → XP_063120668.1 chemokine-like protein TAFA-2 isoform X2
XM_017595215.3 → XP_017450704.1 chemokine-like protein TAFA-2 isoform X1

UniProtKB/TrEMBL

A6HQP1
XM_063264601.1 → XP_063120671.1 chemokine-like protein TAFA-2 isoform X4

UniProtKB/TrEMBL

A0A8I5ZTJ1
XM_063264600.1 → XP_063120670.1 chemokine-like protein TAFA-2 isoform X3
XM_063264597.1 → XP_063120667.1 chemokine-like protein TAFA-2 isoform X1
XM_063264599.1 → XP_063120669.1 chemokine-like protein TAFA-2 isoform X3