Skida1 SKI/DACH domain containing 1 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Skida1provided by RGD
Official Full Name: SKI/DACH domain containing 1provided by RGD
Primary source: RGD:1588196
See related: AllianceGenome:RGD:1588196
Gene type: protein coding
RefSeq status: INFERRED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Orthologous to human SKIDA1 (SKI/DACH domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Kidney (RPKM 32.8), Heart (RPKM 21.4) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 17q12.3

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	17	NC_086035.1 (85706693..85717499, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	17	NC_051352.1 (80798241..80809062, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	17	NC_005116.4 (84827089..84834838, complement)

Chromosome 17 - NC_086035.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

RH140750 (e-PCR)
- UniSTS:222816

RH137546 (e-PCR)
- UniSTS:219634

General protein information

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Preferred Names: SKI/DACH domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001400778.1 → NP_001387707.1 SKI/DACH domain-containing protein 1

Status: INFERRED

Source sequence(s)

JAXUCZ010000017

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086035.1 Reference GRCr8

Range

85706693..85717499 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_039096192.2 → XP_038952120.1 SKI/DACH domain-containing protein 1 isoform X1

UniProtKB/TrEMBL

F1LXY5

Conserved Domains (2) summary

pfam15223
Location:470 → 817

DUF4584; Domain of unknown function (DUF4584)

cd21082
Location:6 → 96

DHD_SKIDA1; Dachshund-homology domain found in SKI/DACH domain-containing protein 1 (SKIDA1) and similar proteins